RNA id: TCONS_00062983


Basic Information

Item Value
RNA id TCONS_00062983
length 2332
RNA type mRNA
GC content 0.44
exon number 15
gene id XLOC_032247
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41144155 ~ 41161017 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCTCGGGACCAACAGTCCTTATTCAGGAGCCATTGAAGCCGGTTTGACCACTCCTCAGGCTTTCTCTttgaggaagtttttttttttaaaccactaacCTACAAACAGGCACTCCAAAAAAGACATTCAAGACGGCGTCTTCCCAAATACCAGCATCATGGAGCACAGCTCAAGGCCAGCGGTGAAGCTGAACCTCTTGAATGGAGCCCTAGTGAAAGCCAGACCAAAACCACCAGCAagagagcagtgggccaataagctTGAGTTTCTCCTGGCGGTGGCAGGGCACATTATTGGCTTGGGGAATGTGTGGAGGTTTCCTTACTTGTGCTACAAGAATGGAGGAGGGGCATTTTTTGTGCCATATGTGCTGTTTCTCTTTACCTGTGGCATCCCACTTTTCTTTTTGGAGACTTCGCTGGGTCAGTTCACCAGTCAGGGTGGAATCACATGCTGGAGGAAAATATGTCCACTCTTCGAAGGTCTTGGTTTTGGCAGTCAAGTCGTTGTCCTCTATACTGGAGTCTACTACATTATTATACTTGCTTGGGCTTTCCTTTACCTCTTCTCATCCTTCACTTCAGAACTGCCATGGGCAAGCTGTAACAACTACTGGAACACACCAAGCTGCATGGAGTTCAGCGAGAGCAACATTACTGAATATTCACCAAATAAAACCACATCTCCTGTTATAGAGTTTTGGGAGAGAAGGATTTTAGGTTTGTCTGGGGGAATTGAACAGATTGGTAATGTGAGATGGGACTTGGCTCTCTGCCTCCTGTTGGCCTGGATCATCTGTTATTTCTGTGTGTGGAAGGGAGTGAAGTCCACAGGCAAGGTGGTGTACTTCACAGCTACCTTCCCTTATTTAATGTTGATAGTATTGCTGGTTCGTGGACTTACTCTTCCTGGAGCAATAAATGGCATCACCTTCTACCTCTATCCTGATCCATCACGTCTCAAAGACCCACAGGTGTGGATGGATGCAGGAAGCCAGATATTTTACTCCTATGGAGTTTGTACAGGAGTACTGACTGCACTGGGAAGCTACAACAAATATGACAACAACTGCTACAGGGACTGTGTATACCTGTGTCTGCTCAACAGCTTGACTAGCTTTGTGGCTGGTTTTGCTATATTTTCAGTCCTTGGCTTTATGGCAGATGAACAGGGGGTGGATATTTCGTTGGTGGCAGAGTCAGgtCCTGGTTTGGCGTTCATCGCTTACCCCCGTGCTGTAGCTCTGATGCCTTTGCCTCAGCTATGGGCGATTTTCTTCTTTATCATGATCATATTTCTGGGACTGGATAGTGAGTTTGTGTATCAGGAAGCCCTGGTTACGTCTATCTCAGATATGTATCCCTCATTCTTCCAAGTTGGACATCGGCGCAAATTTCTTCTCCTCTTCATTTGTTCTGCCAGCTTTTTTGTTGGTCTGCTGATGGTAACAGAGggTGGTCTGTATGTCTTCCAGCTTTTCGACTATTATGCCTGTAGTGGAATGACTCTTCTCACTTTTGCCATCCTTCAGTCCATCTGTGTTGGATGGGTTTATGGAGCTGACCGTCACTATGATTGCGTTGAGGATATGATTGGATATCGGCCATGGCCCTTTATGAAGTGCTGCTGGAAATATCTAACGCCAGCTATATGCACAGGAACTTTTATCTTCTCCTTGGTTCAATACACTCCTCTGAAGTTCAACAATGAGTATGAGTACCCCTGGTGGGGTTACGCCATCGGTGGCTTCTTCACCCTTTCCTCCACCCTGTTAGTTCCACTGTGGATGATTTATTTGGTCGGCACCACTCCAGGGTCTATGAGACAGAGAGTGAGAGCATTGTGCACCCCAGCTGAAGATCTTCCGGATCCAAAATGTCCAAAACAGAAGCTAAACACCGCTACTTTTGAGACATTCACAGATCTATTGACATTACGGACAGTACACATACAGAACTCTTTACCTCACAGAGACGCTGTCTGACCGGCCACTGCAttagttttcttgtttttaaccTCAAGTTCTGTGGCAAACATTTTTTGACATATTGTCATGTAATTTTCATCATAACGTATCATCTGATGGTTAAGGTACAGTAATGTTTATCCAAAGAACAGTTTTCTCAATTGATCGCACAGTTAGCTGAGAATGTAATTATGTTTGAACTGACAAGAAaaggctttttaaaatgtataattgtaataaatgtattgaagCTTTACTTCTAGAAAGCTTCTCTTTTAAGAGTGGAGTGTGTTTGTCTGATctgtaaatatgtataaaatatgaacTTTACAATGAGGCTGggattaaatatatgtattataca

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042165 neurotransmitter binding molecular_function
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-628 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

Ensembl:

ensembl_id ENSDART00000143577

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062980 lncRNA upstream 41899 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00064922 lncRNA upstream 61218 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00064921 lncRNA upstream 158068 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062966 lncRNA upstream 303302 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 479886 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00063001 lncRNA downstream 344098 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 473052 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 473162 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063006 lncRNA downstream 530077 41691094 ~ 41710148 (+) True XLOC_032259
TCONS_00064923 lncRNA downstream 604621 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00062981 mRNA upstream 26961 41099787 ~ 41117242 (+) True XLOC_032246
TCONS_00062979 mRNA upstream 28150 41096058 ~ 41116053 (+) False XLOC_032246
TCONS_00062978 mRNA upstream 83780 41040035 ~ 41060423 (+) True XLOC_032244
TCONS_00062976 mRNA upstream 86835 41038757 ~ 41057368 (+) False XLOC_032244
TCONS_00062984 mRNA downstream 20852 41181869 ~ 41183823 (+) True XLOC_032248
TCONS_00062985 mRNA downstream 25303 41186320 ~ 41189460 (+) True XLOC_032249
TCONS_00062986 mRNA downstream 30465 41191482 ~ 41193419 (+) True XLOC_032250
TCONS_00062988 mRNA downstream 39483 41200500 ~ 41202554 (+) True XLOC_032252
TCONS_00062989 mRNA downstream 94468 41255485 ~ 41445565 (+) False XLOC_032253
TCONS_00062945 other upstream 597228 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1094758 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1772328 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2285901 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 2362045 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 33670 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 293774 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 302768 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 692355 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 836946 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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