RNA id: TCONS_00062984


Basic Information

Item Value
RNA id TCONS_00062984
length 1574
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_032248
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41181869 ~ 41183823 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGTTGACCATCTCTTAGAGGAGTTGAACTGCTCATTCATATTTCCACATAGGCGGTTTTAATTTAGGTTTCAGTAAAAATGAACGGGACAGAAGGGAGCAACTTCTACATCCCCATGTCAAACAGGACTGGGCTTGTGCGAAGCCCTTATGATTACACCCAGTACTATCTGGCAGAACCATGGAAATTCAAGGCTCTGGCTTTCTACATGTTTCTACTGATCATTTTTGGATTTCCCATCAATGTCCTGACTTTGGTGGTTACAGCCCAGCACAAGAAACTCCGACAGCCGCTCAACTACATTTTGGTCAACTTAGCTTTTGCTGGCACAATTATGGTCATCTTTGGATTTACGGTTTCTTTCTACTGCTCACTTGTGGGCTACATGGCTCTTGGTCCATTAGGCTGTGTAATGGAGGGATTCTTCGCAACACTTGGAGGTCAGGTTGCTCTTTGGTCTTTGGTGGTTCTTGCCATTGAGAGGTACATCGTGGTTTGCAAGCCAATGGGAAGCTTCAAATTCTCCGCAAACCATGCGATGGCTGGCATTGCTTTCACATGGTTCATGGCCTGTAGCTGTGCAGTCCCCCCACTTTTTGGCTGGTCCAGATATCTTCCGGAAGGGATGCAAACCTCTTGCGGACCAGATTACTACACACTGAATCCTGAATATAACAATGAGTCTTACGTCATGTACATGTTCAGCTGCCACTTTTGCATACCCGTCACCACAATTTTCTTTACCTATGGCAGTCTGGTCTGCACAGTCAAGGCTGCTGCAGCTCAACAGCAGGAATCTGAGTCCACTCAGAAGGCTGAGAGGGAAGTGACACGCATGGTCATCCTGATGGTTTTGGGCTTCTTGTTTGCTTGGGTTCCCTATGCCAGCTTTGCTGCCTGGATCTTCTTTAACAGGGGAGCTGCTTTCTCCGCACAAGCCATGGCTGTTCCAGCCTTCTTCTCCAAGACTTCAGCTGTTTTTAACCCCATCATCTATGTGCTCCTAAACAAACAGTTCCGTAGCTGCATGCTTAACACCCTTTTCTGTGGCAAGAGTCCTCTTGGTGACGATGAGTCTTCCTCAGTGTCAACAAGCAAAACAGAGGTGTCCTCTGTGTCTCCTGCATAGATCTGCCTATTCAGTGCTCCGTCATTCAAATGAGACAAACTCACGGACATGCAGTACATCTTTGGCCATTTGCAACTGCTGTTTCTTTCAAGACCATACATGTCCACCTAAAAGCATTTTATCAGGAATTCAAGAATAGCCGATGGGTCTGAGGTTAAAGGAAAATGTTATGTTTATTGGATTTATGGAATCGTTTTCTTCACTGTTAGGTGGAGGCAATGGAAATGTATTCAATAAAGTACGCTTGAATTCATCTGGATCTATGCACAATATCTACTCCCGCACCAATAATTTCACTTCACTTGTATGTTTTGATGGaggtctttattttatttttttggtcattGTATTGTCTGCAAAAGCTGTCTGACTTGATCAGGTCAgattctgtaaatattttataaaaagtgtaggtagtatatttaaataaaagcatGCATTCCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990604-42 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Located in photoreceptor outer segment. Is expressed in several structures, including endocrine system; heart; integument; photoreceptor cell; and visual system.

Ensembl:

ensembl_id ENSDART00000002046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062980 lncRNA upstream 79565 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00064922 lncRNA upstream 98884 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00064921 lncRNA upstream 195734 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062966 lncRNA upstream 340968 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 517552 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00063001 lncRNA downstream 321292 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 450246 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 450356 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063006 lncRNA downstream 507271 41691094 ~ 41710148 (+) True XLOC_032259
TCONS_00064923 lncRNA downstream 581815 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00062983 mRNA upstream 20852 41144203 ~ 41161017 (+) True XLOC_032247
TCONS_00062982 mRNA upstream 21325 41144155 ~ 41160544 (+) False XLOC_032247
TCONS_00062981 mRNA upstream 64627 41099787 ~ 41117242 (+) True XLOC_032246
TCONS_00062979 mRNA upstream 65816 41096058 ~ 41116053 (+) False XLOC_032246
TCONS_00062978 mRNA upstream 121446 41040035 ~ 41060423 (+) True XLOC_032244
TCONS_00062985 mRNA downstream 2497 41186320 ~ 41189460 (+) True XLOC_032249
TCONS_00062986 mRNA downstream 7659 41191482 ~ 41193419 (+) True XLOC_032250
TCONS_00062988 mRNA downstream 16677 41200500 ~ 41202554 (+) True XLOC_032252
TCONS_00062989 mRNA downstream 71662 41255485 ~ 41445565 (+) False XLOC_032253
TCONS_00062990 mRNA downstream 71780 41255603 ~ 41446053 (+) True XLOC_032253
TCONS_00062945 other upstream 634894 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1132424 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1809994 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2323567 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 2399711 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 10864 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 270968 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 279962 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 669549 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 814140 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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