RNA id: TCONS_00062985


Basic Information

Item Value
RNA id TCONS_00062985
length 1661
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_032249
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41186320 ~ 41189460 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGCAGTTTTGTGGAGTACAGTTTTGCTGGTGTCTTCTTGGCATACGTGCAACACCTCCAGCAGGATGAACGGCACCGAAGGAAACAACTTTTACATTCCTATGTCCAACAGGACTGGGCTAGTGAGGAGTCCTTACGAATACACACAGTATTACCTGGCAGATCCATGGCAGTTTAAGGCACTggctttttacatgttttttctgATTTGCTTCGGGCTGCCGATCAACGTGCTCACGCTGTTGGTCACAGCTCAGCACAAAAAGCTGAGACagcctttaaattatattttggtgAACTTGGCTTTCGCTGGAACAATTATGGCCTTTTTTGGATTCACGGTTACGTTCTATTGCTCCATTAATGGTTATATGGCTCTAGGTCCTACAGGTTGTGCCATTGAAGGCTTCTTTGCTACACTCGGAGGTCAGGTTGCTCTTTGGTCTCTTGTGGTTCTTGCCATTGAGAGATACATAGTGGTTTGCAAGCCAATGGGAAGCTTCAAATTCTCCTCAAACCATGCGATGGCCGGCATTGCCTTCACATGGGTCATGGCCTCTAGCTGTGCAGTCCCCCCACTTTTTGGCTGGTCCCGATACATCCCAGAGGGAATGCAGACATCCTGCGGACCAGATTATTACACCCTGAACCCAGAATACAACAATGAATCATATGTTTTGTACATGTTCAGCTGTCATTTCTGCGTTCCTGTTACAACCATCTTCTTCACTTATGGAAGCCTCGTTTGCACAGTCAAAGCTgctGCAGCTCAACAGCAGGAATCTGAGTCCACTCAAAAGGCTGAGAGGGAAGTAACACGCATGGTCATCCTAATGGTTTTGGGCTTCTTGGTGGCTTGGGTTCCCTATGCCAGCTTTGCGGCCTGGATCTTTTTTAACAGGGGAGCTGCTTTCTCCGCACAAGCCATGGCTATCCCAGCTTTTTTCTCAAAAGCCTCTGCCTTGTTTAACCCCATTATCTATGTGCTCCTAAACAAACAGTTCCGTAGCTGCATGCTCAACACCCTTTTCTGTGGCAAGAGTCCTCTCGGTGATGATGAGTCCTCCTCAGTTTCAACAAGCAAAACAGAGGTGTCCTCTGTGTCTCCAGCGTAGAACTAATTGCCAACTATGCTTTCTCAATGATTCTTTTAATGCTTTGGAGTCCACTGTCTTCAATAAGCCTAAATATCCACTCCTCAATCTctgtatattttgaaaaatcacaaatagGGCCCTATACTCCCCTCTCTCCCCCTTATCTCTCTGCCTTGGATCCATCGAGTTCAAAGAAGACATTAGCTGGCTTTCCAGACACATTCTCTTCGATAAATAGAGCGTGGGTAGATTAGTTGTGATCAGCACTAGTTTATCTCACGTCTCTCCACCGATGCTTCATCTTAAGGTATAGCTCACCACTAAATCTGAGCATAAGCCTCTTTTCTTGTCATCATCACATCAGTAGGTCGTGACCAGAACTGCTTTAACTCACCCAAGGGTTCAGCGAGATACGTCATCATACACTGAGTTACCTTTTCACATCGACATTATGGATTGTTActcctttatttttgttttcagctGATTTGTCAGCATTTCTGTACATATTTTCTATATGGTATATTTGTTGAAAAGTAgaataataaatacatgcattCAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030728-5 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including green sensitive photoreceptor cell; heart; integument; testis; and visual system.

Ensembl:

ensembl_id ENSDART00000025241

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062980 lncRNA upstream 84016 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00064922 lncRNA upstream 103335 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00064921 lncRNA upstream 200185 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062966 lncRNA upstream 345419 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 522003 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00063001 lncRNA downstream 315655 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 444609 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 444719 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063006 lncRNA downstream 501634 41691094 ~ 41710148 (+) True XLOC_032259
TCONS_00064923 lncRNA downstream 576178 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00062984 mRNA upstream 2497 41181869 ~ 41183823 (+) True XLOC_032248
TCONS_00062983 mRNA upstream 25303 41144203 ~ 41161017 (+) True XLOC_032247
TCONS_00062982 mRNA upstream 25776 41144155 ~ 41160544 (+) False XLOC_032247
TCONS_00062981 mRNA upstream 69078 41099787 ~ 41117242 (+) True XLOC_032246
TCONS_00062979 mRNA upstream 70267 41096058 ~ 41116053 (+) False XLOC_032246
TCONS_00062986 mRNA downstream 2022 41191482 ~ 41193419 (+) True XLOC_032250
TCONS_00062988 mRNA downstream 11040 41200500 ~ 41202554 (+) True XLOC_032252
TCONS_00062989 mRNA downstream 66025 41255485 ~ 41445565 (+) False XLOC_032253
TCONS_00062990 mRNA downstream 66143 41255603 ~ 41446053 (+) True XLOC_032253
TCONS_00062991 mRNA downstream 257081 41446541 ~ 41451844 (+) False XLOC_032254
TCONS_00062945 other upstream 639345 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1136875 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 1814445 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2328018 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062893 other upstream 2404162 38773418 ~ 38782158 (+) True XLOC_032190
TCONS_00062987 other downstream 5227 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062995 other downstream 265331 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 274325 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 663912 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 808503 41997963 ~ 41998096 (+) True XLOC_032265

Expression Profile

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