Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062992 |
| length | 887 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 5 |
| gene id | XLOC_032254 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 41446541 ~ 41451844 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006887 | exocytosis | biological_process |
| GO:0031338 | regulation of vesicle fusion | biological_process |
| GO:0017157 | regulation of exocytosis | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0034613 | cellular protein localization | biological_process |
| GO:0030030 | cell projection organization | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0036064 | ciliary basal body | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005929 | cilium | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-040912-80 | Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in cellular protein localization; cilium assembly; and regulation of vesicle-mediated transport. Predicted to act upstream of or within cell projection organization; exocytosis; and protein transport. Predicted to be located in ciliary basal body. Orthologous to human CPLANE2 (ciliogenesis and planar polarity effector 2). |
| ensembl_id | ENSDART00000128756 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00062980 | lncRNA | upstream | 344246 | 41096173 ~ 41102304 (+) | False | XLOC_032246 |
| TCONS_00064922 | lncRNA | upstream | 363565 | 41080510 ~ 41082985 (+) | True | XLOC_032245 |
| TCONS_00064921 | lncRNA | upstream | 460415 | 40984597 ~ 40986135 (+) | True | XLOC_032242 |
| TCONS_00062966 | lncRNA | upstream | 605649 | 40837650 ~ 40840901 (+) | True | XLOC_032238 |
| TCONS_00062958 | lncRNA | upstream | 782233 | 40662533 ~ 40664317 (+) | True | XLOC_032232 |
| TCONS_00063001 | lncRNA | downstream | 53622 | 41505115 ~ 41505986 (+) | True | XLOC_032258 |
| TCONS_00063004 | lncRNA | downstream | 182576 | 41634069 ~ 41648856 (+) | False | XLOC_032259 |
| TCONS_00063005 | lncRNA | downstream | 182686 | 41634179 ~ 41670341 (+) | False | XLOC_032259 |
| TCONS_00063006 | lncRNA | downstream | 239601 | 41691094 ~ 41710148 (+) | True | XLOC_032259 |
| TCONS_00064923 | lncRNA | downstream | 314145 | 41765638 ~ 41773554 (+) | False | XLOC_032260 |
| TCONS_00062990 | mRNA | upstream | 497 | 41255603 ~ 41446053 (+) | True | XLOC_032253 |
| TCONS_00062989 | mRNA | upstream | 985 | 41255485 ~ 41445565 (+) | False | XLOC_032253 |
| TCONS_00062988 | mRNA | upstream | 243996 | 41200500 ~ 41202554 (+) | True | XLOC_032252 |
| TCONS_00062986 | mRNA | upstream | 253131 | 41191482 ~ 41193419 (+) | True | XLOC_032250 |
| TCONS_00062985 | mRNA | upstream | 257090 | 41186320 ~ 41189460 (+) | True | XLOC_032249 |
| TCONS_00062994 | mRNA | downstream | 1486 | 41452979 ~ 41461390 (+) | True | XLOC_032255 |
| TCONS_00062997 | mRNA | downstream | 12293 | 41463786 ~ 41501766 (+) | True | XLOC_032257 |
| TCONS_00062998 | mRNA | downstream | 52361 | 41503854 ~ 41506112 (+) | False | XLOC_032258 |
| TCONS_00062999 | mRNA | downstream | 52478 | 41503971 ~ 41505239 (+) | False | XLOC_032258 |
| TCONS_00063000 | mRNA | downstream | 52627 | 41504120 ~ 41506749 (+) | False | XLOC_032258 |
| TCONS_00062987 | other | upstream | 251749 | 41194687 ~ 41194801 (+) | True | XLOC_032251 |
| TCONS_00062945 | other | upstream | 899575 | 40545865 ~ 40546975 (+) | False | XLOC_032225 |
| TCONS_00062936 | other | upstream | 1397105 | 40043615 ~ 40049445 (+) | True | XLOC_032217 |
| TCONS_00062919 | other | upstream | 2074675 | 39370620 ~ 39371875 (+) | True | XLOC_032204 |
| TCONS_00062894 | other | upstream | 2588248 | 38845676 ~ 38858302 (+) | False | XLOC_032191 |
| TCONS_00062995 | other | downstream | 3298 | 41454791 ~ 41454873 (+) | True | XLOC_032256 |
| TCONS_00062996 | other | downstream | 12292 | 41463785 ~ 41493470 (+) | False | XLOC_032257 |
| TCONS_00063008 | other | downstream | 401879 | 41853372 ~ 41869189 (+) | True | XLOC_032262 |
| TCONS_00063013 | other | downstream | 546470 | 41997963 ~ 41998096 (+) | True | XLOC_032265 |
| TCONS_00063014 | other | downstream | 711157 | 42162650 ~ 42162774 (+) | True | XLOC_032266 |
