RNA id: TCONS_00062993


Basic Information

Item Value
RNA id TCONS_00062993
length 456
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_032254
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41446541 ~ 41451844 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCACAATATCTTTCTGCACTTGTGTTAAATTAAAATGTCTGTCCCACCTGGATCCATTATCGTGTCAGACTGGCACCGCTGTCCTGATAGCAGAGAGTTTTTCAGCAAAATACTGCACAAGAAGAGACGGCGAAAGTTTGGGCTCTTAGAGGCGCCAATGATGCCTCCTCAGATGAATGTGGACCTCGTTCGCTACAAGGTGTTTCTCTCAGGTAAAACTGGAGTGGGGAAGAGCGCGCTTGCTGCCCGTCTCGCTGGACTCGACCTGCCCAAAATGCACTACGAGACCACAGACGTGACGGAGAGCGACGTGACACATTTTCAGGAGGTGTGGGGTCTTCCGGTTTTCCGTGTGGGAGGTGATGTGAGTGCTGGGCTTGGTGAGGTAGCACCTCTGCTAAATGCCCTTGTGGAAAACTTGTGGCACCAGGATTGTATGGCCGCTTCATCTGTC

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0031338 regulation of vesicle fusion biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0015031 protein transport biological_process
GO:0034613 cellular protein localization biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040912-80 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in cellular protein localization; cilium assembly; and regulation of vesicle-mediated transport. Predicted to act upstream of or within cell projection organization; exocytosis; and protein transport. Predicted to be located in ciliary basal body. Orthologous to human CPLANE2 (ciliogenesis and planar polarity effector 2).

Ensembl:

ensembl_id ENSDART00000144864

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062980 lncRNA upstream 344303 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00064922 lncRNA upstream 363622 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00064921 lncRNA upstream 460472 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062966 lncRNA upstream 605706 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 782290 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00063001 lncRNA downstream 53806 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 182760 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 182870 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063006 lncRNA downstream 239785 41691094 ~ 41710148 (+) True XLOC_032259
TCONS_00064923 lncRNA downstream 314329 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00062990 mRNA upstream 554 41255603 ~ 41446053 (+) True XLOC_032253
TCONS_00062989 mRNA upstream 1042 41255485 ~ 41445565 (+) False XLOC_032253
TCONS_00062988 mRNA upstream 244053 41200500 ~ 41202554 (+) True XLOC_032252
TCONS_00062986 mRNA upstream 253188 41191482 ~ 41193419 (+) True XLOC_032250
TCONS_00062985 mRNA upstream 257147 41186320 ~ 41189460 (+) True XLOC_032249
TCONS_00062994 mRNA downstream 1670 41452979 ~ 41461390 (+) True XLOC_032255
TCONS_00062997 mRNA downstream 12477 41463786 ~ 41501766 (+) True XLOC_032257
TCONS_00062998 mRNA downstream 52545 41503854 ~ 41506112 (+) False XLOC_032258
TCONS_00062999 mRNA downstream 52662 41503971 ~ 41505239 (+) False XLOC_032258
TCONS_00063000 mRNA downstream 52811 41504120 ~ 41506749 (+) False XLOC_032258
TCONS_00062987 other upstream 251806 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062945 other upstream 899632 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1397162 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 2074732 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00062894 other upstream 2588305 38845676 ~ 38858302 (+) False XLOC_032191
TCONS_00062995 other downstream 3482 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062996 other downstream 12476 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063008 other downstream 402063 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 546654 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063014 other downstream 711341 42162650 ~ 42162774 (+) True XLOC_032266

Expression Profile

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