RNA id: TCONS_00062997


Basic Information

Item Value
RNA id TCONS_00062997
length 2650
RNA type mRNA
GC content 0.42
exon number 8
gene id XLOC_032257
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41463785 ~ 41501766 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTCGCTTGGATAGCTCACAGTCTGTCAAACACCAGACTCTTACTTCATTCTGCTGCTTTCACACCGCTGTGTTTCTGATAGGTTAACGCACTGACCACTGCTTGAAGAGAGTTTGTAAAAAGAAGATCCTCCAGGTGACCTGACCTGAGCATCCAGCTTCATCCAACTTCAGAAGGTTTCTTGGCGGGTGGGAAGGCACCACACTGACCCGCCATGTTTCTGGTTCTGGTGGTTACAGAGGAGCTGAGGGAGTTTCTGGCCCGGGCACGAAACGGAACCGGCCGCCTCATCCAGGTGTTGATCAGAGACGAGCAGCTGGTGCTGGGGGCGTACAGAGAACCCCGTCACAGTTGGGACAAAGACTACGACCCAGTCCTACTCCCCCTGCTGGACCCGCTCGAGCCCTGCTATATCTTATACCGGCTGGACTCCAAAAACGCACAAGGCTATGAGTGGCTCTTCATCTCCTGGTCTCCGGACCAGTCGCCTGTCCGACAGAAGATGCTTTACGCTGCCACTCGCGCCACAGTGAAGAAAGAGTTTGGTGGTGGACACGTCAAAGATGAGATGTTTGGCACAGTTGAGGAGGACATCTGTCTCCAGGGGTATCTGCGACACATCACTTCATGCTCAGCACCAGCGCCTCTGACAGTGGCTGAACAGGAGCTTCAGAGAATCAAAATCACAGAGGTGAAGGCTGAGATCAGTGTGGACCCCAAACATCAGACTCTACAGGGTCTTGCTTTTCCATTACAGGCTGAAGCCAAACGTGCTTTAAAGCAGCTCGCAGAGAGACGCATCAACTACATTCAACTGAAGTTAGACACAGAGAAGGAAACCATTGACTTGGTGCACACCAGTCCAACAGACATCCGCGACCTGCCGTGTCGGATTCCTCTGGATACACCCAGATATCACTTCTTCCTCTACAAACACTCACATGAGGGGGATTACCTCGAGTCTGTTGTGTTCATATACTCTATGCCAGGCTACAGCTGCAGCATCAAAGAGAGGATGCTCTATTCCAGCTGCAAGAGTCGACTTCTGGATGAAGTAGAGAGAGATTTTCATCTTGAGGTGGCTAAGAAGCTGGAGATTGACAGTGGAGAGGAGCTGACAGAGGAATATCTGTATGATGAGGTCCATCCTAAACAACATGCCCACAAGCAAGCGTTCGCCAAGCCTCGCGGGCCTGCTGGAAAAAGAGGAAACAAGCGTCTGATCAAAGGTGGAGGAGAGAACGGCGGAAACAGCTAGAATGAAcacaagagagaaagagagatacgAACTTCAGTTGCTCCATGAACGTCCCACAGGTCCCTTTTTTCCACCCGTCTGCAGGTCATCTGTTCATCCTGCACGcggagagaaagaaaaataacaataCTGTGCTCAGTTGTTTTTGTTTCTACTTTCTTTGGCTTGTATTTTCATTCAGTCTGTGTTACAGTAATGTGCATATAACAGCACCCTCCGCTAATATCGGCACCCTTGGTAAATATATCATTTAGCCTTTtgctcaaaatattaataaaaatagtgaAGACGATTTAGTTTTCAATTGTTTGTTCTCAGTGAGAGCAGAATTGTTCATATTTTGCACAAAAGTTTAAAAGGTAACACAATAAAGTTATCTTTTCATAGGCTTTTTTTGCTCATGTTTACCAGGAGAGCCAGTATTAGTGGGGGGCAGTGTATTTAGGAGACGAACTCAGGAAATTATTTTTTCTGTGTACATTTTAAGAGCATATTTTTATGTCATTTCGAACGTACTTGCAGACACACTCCAAACTCTCAGCATATAAAAAAAGGATTTGTGTTTATTAGCTTGCTCATGCCTTAAATGTGTCTTTCAAAGAAGTTTGTCCACCTTTTTAAACCCCAAAGTCCAAGAACCTGCTGCAGATTCATAGAAAACGACTCAACCATATTCACACACTTTCAGCCAAACCAAATGTGACACGTAGTCAGAATATTATACTCGGCTACGTGAGAGTCACTCAGTTTGTTCAGTAACAGATATGTCGCAATGATTGGATGTGTTAAAATATGCAGATTTAGACATagatttctgatttattttagaatttatgcGTTGTATTTTCGGGTCAAAGATGAAAAAgtcattttatatacagttgaagtcagaagtattaatcctcctgaattattagaacccgtttattttttccacagtttgtgtttaacagagagaatattttttccacacatttctaaacataatagttttaataactcatctctaagaactgatttattttattttttgccattatgacactacataatatttgactagatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaactagggtaattaggttaactaggctggttagggtatttaggcaagttattgcataataatggtttgttcagtatactatcgaaaaaaaatattgcttaaagggactaataattttgtccttaaaatggcttttaaaaaaaataaaaactgcttttgttctagccaaaataaaacaaataagactttctcccaaagaaaaaaaaaattatcagacattctgtgaaaatttcctttctctgttaaacataatttgtgaaatatttaaaaagaaaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000065006

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062980 lncRNA upstream 361482 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00064922 lncRNA upstream 380801 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00064921 lncRNA upstream 477651 40984597 ~ 40986135 (+) True XLOC_032242
TCONS_00062966 lncRNA upstream 622885 40837650 ~ 40840901 (+) True XLOC_032238
TCONS_00062958 lncRNA upstream 799469 40662533 ~ 40664317 (+) True XLOC_032232
TCONS_00063001 lncRNA downstream 3349 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00063004 lncRNA downstream 132303 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063005 lncRNA downstream 132413 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063006 lncRNA downstream 189328 41691094 ~ 41710148 (+) True XLOC_032259
TCONS_00064923 lncRNA downstream 263872 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00062994 mRNA upstream 2396 41452979 ~ 41461390 (+) True XLOC_032255
TCONS_00062991 mRNA upstream 11942 41446541 ~ 41451844 (+) False XLOC_032254
TCONS_00062992 mRNA upstream 12293 41446550 ~ 41451493 (+) False XLOC_032254
TCONS_00062993 mRNA upstream 12477 41446607 ~ 41451309 (+) True XLOC_032254
TCONS_00062990 mRNA upstream 17733 41255603 ~ 41446053 (+) True XLOC_032253
TCONS_00062998 mRNA downstream 2088 41503854 ~ 41506112 (+) False XLOC_032258
TCONS_00062999 mRNA downstream 2205 41503971 ~ 41505239 (+) False XLOC_032258
TCONS_00063000 mRNA downstream 2354 41504120 ~ 41506749 (+) False XLOC_032258
TCONS_00063002 mRNA downstream 53028 41554794 ~ 41755753 (+) False XLOC_032259
TCONS_00063003 mRNA downstream 53481 41555247 ~ 41757181 (+) False XLOC_032259
TCONS_00062995 other upstream 8913 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062987 other upstream 268985 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062945 other upstream 916811 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1414341 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00062919 other upstream 2091911 39370620 ~ 39371875 (+) True XLOC_032204
TCONS_00063008 other downstream 351606 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 496197 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063014 other downstream 660884 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063021 other downstream 1117136 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063022 other downstream 1134194 42635960 ~ 42643033 (+) True XLOC_032273

Expression Profile

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