RNA id: TCONS_00063006


Basic Information

Item Value
RNA id TCONS_00063006
length 539
lncRNA type retained_intron
GC content 0.48
exon number 5
gene id XLOC_032259
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41554794 ~ 41757181 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTTTGAGTTTCTGCCGCACATGGGAGATGAGGTGTGCCAGGTTAGTGCCCAGCAGCCCGTGCAGACTGAACTGCTGATGCGTTTCCACCAGCTGCAGTCCCGATTGGCCACGCTCAAAATTGAGAACGAGGAGGTACGCAAGACCTTGGATGCCACCATGCAGACCTTACAAGACATGCTGACAGTGGAGGACTTTGATGTGTCAGATGCCTTCCAACACAGCCGATCCACTGAGTCCATTAAATCTGTGGCTTCAGAGAGTTACATGAGCAAGTTAAACATCGCAAAGAGACGAGCCAATCAGCAGGAGACAGAAGTCTTTTACTTCACTAAATTCAAGGAGTACCTGAACGGCAGTAACCTCATCATTAAGCTGCAGGCCAAGCATGACCTGCTAAAACAGACTCTGGGGGAAGGAGAAAGAGCTGAATGTGGAACTACAAGGTAAGAGAGATCTGCTGTTCATCACATtccaacaaacaaaataaagttttccAATTAGCCTCGGTGGAATCTGTGCAATAACCATATCAttac

Function

GO:

id name namespace
GO:0030336 negative regulation of cell migration biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060524-4 Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human SRGAP3 (SLIT-ROBO Rho GTPase activating protein 3).

Ensembl:

ensembl_id ENSDART00000156046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063005 lncRNA upstream 20753 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063004 lncRNA upstream 42238 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063001 lncRNA upstream 185108 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00062980 lncRNA upstream 588790 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00064922 lncRNA upstream 608109 41080510 ~ 41082985 (+) True XLOC_032245
TCONS_00064923 lncRNA downstream 55490 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00064925 lncRNA downstream 55538 41765686 ~ 41773554 (+) False XLOC_032260
TCONS_00064924 lncRNA downstream 55538 41765686 ~ 41773554 (+) False XLOC_032260
TCONS_00064926 lncRNA downstream 55559 41765707 ~ 41773554 (+) True XLOC_032260
TCONS_00064927 lncRNA downstream 69001 41779149 ~ 41788414 (+) False XLOC_032261
TCONS_00063000 mRNA upstream 184345 41504120 ~ 41506749 (+) False XLOC_032258
TCONS_00062998 mRNA upstream 184982 41503854 ~ 41506112 (+) False XLOC_032258
TCONS_00062999 mRNA upstream 185855 41503971 ~ 41505239 (+) False XLOC_032258
TCONS_00062997 mRNA upstream 189328 41463786 ~ 41501766 (+) True XLOC_032257
TCONS_00062994 mRNA upstream 229704 41452979 ~ 41461390 (+) True XLOC_032255
TCONS_00063007 mRNA downstream 98525 41808673 ~ 41887398 (+) False XLOC_032262
TCONS_00063011 mRNA downstream 246207 41956355 ~ 41974205 (+) False XLOC_032264
TCONS_00063012 mRNA downstream 247132 41957280 ~ 41974205 (+) True XLOC_032264
TCONS_00063015 mRNA downstream 628161 42338309 ~ 42341219 (+) True XLOC_032267
TCONS_00063017 mRNA downstream 765582 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00062996 other upstream 197624 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00062995 other upstream 236221 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062987 other upstream 496293 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062945 other upstream 1144119 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1641649 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00063008 other downstream 143224 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 287815 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063014 other downstream 452502 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063021 other downstream 908754 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063022 other downstream 925812 42635960 ~ 42643033 (+) True XLOC_032273

Expression Profile

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