RNA id: TCONS_00064925


Basic Information

Item Value
RNA id TCONS_00064925
length 685
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_032260
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41765638 ~ 41773554 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTTTGTGGCGCCAAATGTGGTCGGTCCAGACTAAGGCAATAAAGACTGCATTAAGCCCGCGGTGAGATGCGAATACAGGTCCGCGGCGTTGAAACCCATcgtgcttaccactggaccacaatggcactaTAACTGAGGACTGTGTGTGCACCCTCTGGCCCAAccaacgtaaaacaaacaaaacaaaacgaaatgGGTAGCATCGCTCTCTGGGTGACAGGATTGGCTCCAGGTCAGATTAGTAAGAAAACACGGGATGGATAAACTTCAGCTTTATTGGGGCAAATGAACTGCTGGCAGTCACTGTGCTAATGGAAAACCCTTGAGAACAACTGCCATCTGAATTGCataatgtactgtcattataAAATGTGTTTGCTGAGACAGCGGAGAAAACAACAGATATTGAGATCCAAAGACTAGAAAATTTCATTTGGTTGTGATGGACTGTGTTTTGTGCTTGTTTTAGAGAACTGGGTTTGGGTCTGAGTTTATGATGGTTCTATGTATATTTTCTGATACTTAAAGAATTTgttgaagtaaaaataaaaattctgttatttactcaccctcacctTGTTCCAAACCTCTTGAGTCCATCGTCCATTGTTCGAATGCaccatggcgtgacacaactgactcttaagggAACgatagatgagactctgattggttgcgTGCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063006 lncRNA upstream 55538 41691094 ~ 41710148 (+) True XLOC_032259
TCONS_00063005 lncRNA upstream 95345 41634179 ~ 41670341 (+) False XLOC_032259
TCONS_00063004 lncRNA upstream 116830 41634069 ~ 41648856 (+) False XLOC_032259
TCONS_00063001 lncRNA upstream 259700 41505115 ~ 41505986 (+) True XLOC_032258
TCONS_00062980 lncRNA upstream 663382 41096173 ~ 41102304 (+) False XLOC_032246
TCONS_00064927 lncRNA downstream 5595 41779149 ~ 41788414 (+) False XLOC_032261
TCONS_00064928 lncRNA downstream 6930 41780484 ~ 41783287 (+) True XLOC_032261
TCONS_00064680 lncRNA downstream 122830 41896384 ~ 41910407 (+) False XLOC_032263
TCONS_00063009 lncRNA downstream 135819 41909373 ~ 41910470 (+) False XLOC_032263
TCONS_00063010 lncRNA downstream 135819 41909373 ~ 41915013 (+) True XLOC_032263
TCONS_00063003 mRNA upstream 8505 41555247 ~ 41757181 (+) False XLOC_032259
TCONS_00063002 mRNA upstream 9933 41554794 ~ 41755753 (+) False XLOC_032259
TCONS_00063000 mRNA upstream 258937 41504120 ~ 41506749 (+) False XLOC_032258
TCONS_00062998 mRNA upstream 259574 41503854 ~ 41506112 (+) False XLOC_032258
TCONS_00063007 mRNA downstream 35119 41808673 ~ 41887398 (+) False XLOC_032262
TCONS_00063011 mRNA downstream 182801 41956355 ~ 41974205 (+) False XLOC_032264
TCONS_00063012 mRNA downstream 183726 41957280 ~ 41974205 (+) True XLOC_032264
TCONS_00063015 mRNA downstream 564755 42338309 ~ 42341219 (+) True XLOC_032267
TCONS_00063017 mRNA downstream 702176 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00062996 other upstream 272216 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00062995 other upstream 310813 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062987 other upstream 570885 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062945 other upstream 1218711 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1716241 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00063008 other downstream 79818 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00063013 other downstream 224409 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063014 other downstream 389096 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063021 other downstream 845348 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063022 other downstream 862406 42635960 ~ 42643033 (+) True XLOC_032273