RNA id: TCONS_00063008


Basic Information

Item Value
RNA id TCONS_00063008
length 691
RNA type processed_transcript
GC content 0.36
exon number 2
gene id XLOC_032262
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41808673 ~ 41887398 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTGTAAACTACAGCATTCAGAACAGTTCCCTTCCCATTTCCACATCACTGAAGGTGAAGAGTGAAGACACTGTAATTGAGCTTCCACCAAGATCATCAAGCCCTGCCATCAGTGAAGTGTCAGTCAGCAGCTCCATCTCTGATATCTTCTGTTGAAGACAAGACAGCAGCTACTCAAGTAAGAAGCACTTCAACAAAATGACATACACATTTCACACTTCATCACAGGCAGGCttacaaaatgtgttttttttttcatctttgccaacatttataaaatgtataaatcaagccattttgtttaatttttgtattcACAAAAggttattcatgcattcattcaattTCATTTAGATGATTGCACTTTATTTTGCCACTTATTATGAGCATGATTACAGTGTGCTGCTAGCTTATTTGTGCATACTTGAGCATATTACAGCTGTTTTTGCTTTCCTTCACTGTCTACCCATAAGATATAGTGTGAGGCCGCCACATACACGCCCTTTgctgaaaactctagatctttgcaACTTAACATCATTAAGACCTTTAGATAACAATTGATaacaattttggtgttgatctgaTGACATCCCTATCAGttcattaaaatatgttaaaatgacTTCTTTTGGGTTTGAGATTTTGCTCAAAGAGACTTTTTTTGTAGGTATTGGAATGTTTGATTTG

Function

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0009411 response to UV biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0097505 Rad6-Rad18 complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-745 Predicted to enable metal ion binding activity; single-stranded DNA binding activity; and ubiquitin protein ligase activity. Predicted to be involved in postreplication repair and protein monoubiquitination. Predicted to act upstream of or within DNA repair. Predicted to be part of Rad6-Rad18 complex. Predicted to be active in nucleus. Orthologous to human RAD18 (RAD18 E3 ubiquitin protein ligase).

Ensembl:

ensembl_id ENSDART00000143439

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064927 lncRNA upstream 64958 41779149 ~ 41788414 (+) False XLOC_032261
TCONS_00064928 lncRNA upstream 70085 41780484 ~ 41783287 (+) True XLOC_032261
TCONS_00064923 lncRNA upstream 79818 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00064925 lncRNA upstream 79818 41765686 ~ 41773554 (+) False XLOC_032260
TCONS_00064924 lncRNA upstream 79818 41765686 ~ 41773554 (+) False XLOC_032260
TCONS_00064680 lncRNA downstream 27195 41896384 ~ 41910407 (+) False XLOC_032263
TCONS_00063009 lncRNA downstream 40184 41909373 ~ 41910470 (+) False XLOC_032263
TCONS_00063010 lncRNA downstream 40184 41909373 ~ 41915013 (+) True XLOC_032263
TCONS_00063016 lncRNA downstream 514005 42383194 ~ 42383446 (+) True XLOC_032268
TCONS_00063020 lncRNA downstream 735052 42604241 ~ 42610935 (+) False XLOC_032271
TCONS_00063003 mRNA upstream 96191 41555247 ~ 41757181 (+) False XLOC_032259
TCONS_00063002 mRNA upstream 97619 41554794 ~ 41755753 (+) False XLOC_032259
TCONS_00063000 mRNA upstream 346623 41504120 ~ 41506749 (+) False XLOC_032258
TCONS_00062998 mRNA upstream 347260 41503854 ~ 41506112 (+) False XLOC_032258
TCONS_00062999 mRNA upstream 348133 41503971 ~ 41505239 (+) False XLOC_032258
TCONS_00063011 mRNA downstream 87166 41956355 ~ 41974205 (+) False XLOC_032264
TCONS_00063012 mRNA downstream 88091 41957280 ~ 41974205 (+) True XLOC_032264
TCONS_00063015 mRNA downstream 469120 42338309 ~ 42341219 (+) True XLOC_032267
TCONS_00063017 mRNA downstream 606541 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00063018 mRNA downstream 676608 42545797 ~ 42598011 (+) False XLOC_032270
TCONS_00062996 other upstream 359902 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00062995 other upstream 398499 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062987 other upstream 658571 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062945 other upstream 1306397 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00062936 other upstream 1803927 40043615 ~ 40049445 (+) True XLOC_032217
TCONS_00063013 other downstream 128774 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063014 other downstream 293461 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063021 other downstream 749713 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063022 other downstream 766771 42635960 ~ 42643033 (+) True XLOC_032273
TCONS_00063023 other downstream 777222 42646411 ~ 42653425 (+) True XLOC_032274

Expression Profile

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