RNA id: TCONS_00063009


Basic Information

Item Value
RNA id TCONS_00063009
length 559
lncRNA type lincRNA
GC content 0.42
exon number 2
gene id XLOC_032263
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41896384 ~ 41915013 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCTGTCCACCATTTCTAATCAAGTGCTGAGTTTTCATGTTGAAATTCCTTAAATGAAGCCTTCTCTGGGTTGTGTCTTCCTTCATTTTCTAGGTTTAAAAGTGGAATGCATGTATAGATTGAGCTAGCAGAGGAAATTGGGCTTCCTTTTTTAAGCTCTGATGATTGAACACAAATTGTCTGGCTTGTGTTTTGGTGAGTAAAACGCAACACAGAAATGACTTTTTTTCCCTCCTTCACTGTTGCTTTTAGATATTGTCCAGCCATGCAGTGGACCATGTTTAGTGAAGGGCCTGAACCAGAAGAGAACCAGATTGATTGCTCTGATTTTCTCCCACTGCAATCTCATGGGCGGAAAGCTGACTTCCTATTGAAGAGTCTCCTATCATCAAATTAGCTTTTCATTTGTCCACCTGAATGGCGCTGATAAGTATAACAATGAAGCCCTGTGACAGCAGATGGCTATACGTCTGAAGCTCTTGATTATCTCACGATGGCGTAAATTGAAGCAAACAGCAGCTGGAGATGAGCGTGAAGTTCAGAAGGAACCACCAACTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194466

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064927 lncRNA upstream 120959 41779149 ~ 41788414 (+) False XLOC_032261
TCONS_00064928 lncRNA upstream 126086 41780484 ~ 41783287 (+) True XLOC_032261
TCONS_00064923 lncRNA upstream 135819 41765638 ~ 41773554 (+) False XLOC_032260
TCONS_00063016 lncRNA downstream 472724 42383194 ~ 42383446 (+) True XLOC_032268
TCONS_00063020 lncRNA downstream 693771 42604241 ~ 42610935 (+) False XLOC_032271
TCONS_00064929 lncRNA downstream 698072 42608542 ~ 42610935 (+) True XLOC_032271
TCONS_00064931 lncRNA downstream 746243 42656713 ~ 42666008 (+) False XLOC_032275
TCONS_00064930 lncRNA downstream 746243 42656713 ~ 42666008 (+) False XLOC_032275
TCONS_00063007 mRNA upstream 21975 41808673 ~ 41887398 (+) False XLOC_032262
TCONS_00063003 mRNA upstream 152192 41555247 ~ 41757181 (+) False XLOC_032259
TCONS_00063002 mRNA upstream 153620 41554794 ~ 41755753 (+) False XLOC_032259
TCONS_00063000 mRNA upstream 402624 41504120 ~ 41506749 (+) False XLOC_032258
TCONS_00062999 mRNA upstream 404134 41503971 ~ 41505239 (+) False XLOC_032258
TCONS_00063011 mRNA downstream 45885 41956355 ~ 41974205 (+) False XLOC_032264
TCONS_00063012 mRNA downstream 46810 41957280 ~ 41974205 (+) True XLOC_032264
TCONS_00063015 mRNA downstream 427839 42338309 ~ 42341219 (+) True XLOC_032267
TCONS_00063017 mRNA downstream 565260 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00063018 mRNA downstream 635327 42545797 ~ 42598011 (+) False XLOC_032270
TCONS_00063008 other upstream 40184 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00062996 other upstream 415903 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00062995 other upstream 454500 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00062987 other upstream 714572 41194687 ~ 41194801 (+) True XLOC_032251
TCONS_00062945 other upstream 1362398 40545865 ~ 40546975 (+) False XLOC_032225
TCONS_00063013 other downstream 87493 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063014 other downstream 252180 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063021 other downstream 708432 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063022 other downstream 725490 42635960 ~ 42643033 (+) True XLOC_032273
TCONS_00063023 other downstream 735941 42646411 ~ 42653425 (+) True XLOC_032274