Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00063011 |
| length | 1886 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_032264 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 41956355 ~ 41974205 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0001992 | regulation of systemic arterial blood pressure by vasopressin | biological_process |
| GO:0045766 | positive regulation of angiogenesis | biological_process |
| GO:0060137 | maternal process involved in parturition | biological_process |
| GO:0048848 | neurohypophysis morphogenesis | biological_process |
| GO:0045907 | positive regulation of vasoconstriction | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| GO:0042277 | peptide binding | molecular_function |
| GO:0004990 | oxytocin receptor activity | molecular_function |
| GO:0005000 | vasopressin receptor activity | molecular_function |
| id | description |
|---|---|
| ko04020 | Calcium signaling pathway |
| ko04024 | cAMP signaling pathway |
| ko04080 | Neuroactive ligand-receptor interaction |
| ko04921 | Oxytocin signaling pathway |
| ko04030 | G protein-coupled receptors |
| id | description |
|---|---|
| ZDB-GENE-110805-2 | Enables peptide hormone binding activity. Acts upstream of or within neurohypophysis morphogenesis and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human OXTR (oxytocin receptor). |
| ensembl_id | ENSDART00000176856 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00063010 | lncRNA | upstream | 41342 | 41909373 ~ 41915013 (+) | True | XLOC_032263 |
| TCONS_00063009 | lncRNA | upstream | 45885 | 41909373 ~ 41910470 (+) | False | XLOC_032263 |
| TCONS_00064680 | lncRNA | upstream | 45948 | 41896384 ~ 41910407 (+) | False | XLOC_032263 |
| TCONS_00064927 | lncRNA | upstream | 167941 | 41779149 ~ 41788414 (+) | False | XLOC_032261 |
| TCONS_00064928 | lncRNA | upstream | 173068 | 41780484 ~ 41783287 (+) | True | XLOC_032261 |
| TCONS_00063016 | lncRNA | downstream | 408989 | 42383194 ~ 42383446 (+) | True | XLOC_032268 |
| TCONS_00063020 | lncRNA | downstream | 630036 | 42604241 ~ 42610935 (+) | False | XLOC_032271 |
| TCONS_00064929 | lncRNA | downstream | 634337 | 42608542 ~ 42610935 (+) | True | XLOC_032271 |
| TCONS_00064931 | lncRNA | downstream | 682508 | 42656713 ~ 42666008 (+) | False | XLOC_032275 |
| TCONS_00064930 | lncRNA | downstream | 682508 | 42656713 ~ 42666008 (+) | False | XLOC_032275 |
| TCONS_00063007 | mRNA | upstream | 68957 | 41808673 ~ 41887398 (+) | False | XLOC_032262 |
| TCONS_00063003 | mRNA | upstream | 199174 | 41555247 ~ 41757181 (+) | False | XLOC_032259 |
| TCONS_00063002 | mRNA | upstream | 200602 | 41554794 ~ 41755753 (+) | False | XLOC_032259 |
| TCONS_00063000 | mRNA | upstream | 449606 | 41504120 ~ 41506749 (+) | False | XLOC_032258 |
| TCONS_00062998 | mRNA | upstream | 450243 | 41503854 ~ 41506112 (+) | False | XLOC_032258 |
| TCONS_00063015 | mRNA | downstream | 364104 | 42338309 ~ 42341219 (+) | True | XLOC_032267 |
| TCONS_00063017 | mRNA | downstream | 501525 | 42475730 ~ 42505007 (+) | True | XLOC_032269 |
| TCONS_00063018 | mRNA | downstream | 571592 | 42545797 ~ 42598011 (+) | False | XLOC_032270 |
| TCONS_00063019 | mRNA | downstream | 613432 | 42587637 ~ 42598328 (+) | True | XLOC_032270 |
| TCONS_00063026 | mRNA | downstream | 692489 | 42666694 ~ 42690736 (+) | False | XLOC_032276 |
| TCONS_00063008 | other | upstream | 87166 | 41853372 ~ 41869189 (+) | True | XLOC_032262 |
| TCONS_00062996 | other | upstream | 462885 | 41463785 ~ 41493470 (+) | False | XLOC_032257 |
| TCONS_00062995 | other | upstream | 501482 | 41454791 ~ 41454873 (+) | True | XLOC_032256 |
| TCONS_00062987 | other | upstream | 761554 | 41194687 ~ 41194801 (+) | True | XLOC_032251 |
| TCONS_00062945 | other | upstream | 1409380 | 40545865 ~ 40546975 (+) | False | XLOC_032225 |
| TCONS_00063013 | other | downstream | 23758 | 41997963 ~ 41998096 (+) | True | XLOC_032265 |
| TCONS_00063014 | other | downstream | 188445 | 42162650 ~ 42162774 (+) | True | XLOC_032266 |
| TCONS_00063021 | other | downstream | 644697 | 42618902 ~ 42622652 (+) | True | XLOC_032272 |
| TCONS_00063022 | other | downstream | 661755 | 42635960 ~ 42643033 (+) | True | XLOC_032273 |
| TCONS_00063023 | other | downstream | 672206 | 42646411 ~ 42653425 (+) | True | XLOC_032274 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000340_10455853_10465771.mRNA | True | 2479 | mRNA | 0.42 | 2 | CI01000340 | 10455299 ~ 10466523 (+) |
