RNA id: TCONS_00063020


Basic Information

Item Value
RNA id TCONS_00063020
length 917
lncRNA type inter_gene
GC content 0.46
exon number 6
gene id XLOC_032271
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42604241 ~ 42610935 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATGCTCAACTCTTAATATTCTTTTACGCACTTTGAGAGTGTTTGCGTTATTTCAGAGAGATATTTAAGCACATATGAAGTAACAGTGCCGTCTGTGTACTATAGCTACACAATGCAGCATTTAGCTCGCTCGTAAATATCGCTGCTGTCCTCAGATCATTGTCTGAGCAGAAGTTTCATCATAAGCCATGACTGTCAGATGCTCTTCATCTCAGGAGCTGTATTTTTATATGCTTGATAACAGATATAAGCGAGAAGAGGCTGAATCCAAAGCCCGAGAAGAAGCAGAGAAACAGAGGATCGAACGAGAGAAACACTTCCAGAAGGAGGAGCTGGAACGCTTGGAAAGAAAGAAGcgTCTGGAAGAAATCATGAAGAGGACTCGTAAGAGTGACGCAGGAGCAcaggagagatgtTAATACAGAAAAATCCGTCAGAAGCTCTTCATACTGGTGCGACAAACCAATCACCAATGAGCTCTGTGTCCTGGGACGCAGCACCGGTCATTAACGGAGCTCCGCccactaagcatcagaatggacTGTCCTCCAATGGAGACGCTGCAGACTTTGAGGAGATAATCAAGCTGTCCAATCACAGTGGGAACAGTGGGCAGAGTCAACCGGCTGACGACCCAATCATGGCCTTCGAGGGAGGAGAACCGTTCATGATGAAGGCGAGGCCTATGAAACCTCAACATGTGGCAGAGGTGCTGTGAGAGATGAGATATCAGAGTCTTCTGGATATGAAGAGAAGAAGAGAAGCCTTACTCTACCACCGCTTCCACCCTGATGTGTGCCAAACCAACAAAAACTGctttaacaacaaacaaactgCTTTTAACAACAAAGACTGCTTTAACTTTAGAAACACAGCCAAGCCGGACGCGCTCAGGAGAAAGTGCCAGAAGACGAC

Function

GO:

id name namespace
GO:0032102 negative regulation of response to external stimulus biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063016 lncRNA upstream 220795 42383194 ~ 42383446 (+) True XLOC_032268
TCONS_00063010 lncRNA upstream 689228 41909373 ~ 41915013 (+) True XLOC_032263
TCONS_00063009 lncRNA upstream 693771 41909373 ~ 41910470 (+) False XLOC_032263
TCONS_00064680 lncRNA upstream 693834 41896384 ~ 41910407 (+) False XLOC_032263
TCONS_00064927 lncRNA upstream 815827 41779149 ~ 41788414 (+) False XLOC_032261
TCONS_00064931 lncRNA downstream 45778 42656713 ~ 42666008 (+) False XLOC_032275
TCONS_00064930 lncRNA downstream 45778 42656713 ~ 42666008 (+) False XLOC_032275
TCONS_00063024 lncRNA downstream 45787 42656722 ~ 42666008 (+) False XLOC_032275
TCONS_00063025 lncRNA downstream 45830 42656765 ~ 42666008 (+) False XLOC_032275
TCONS_00064932 lncRNA downstream 46114 42657049 ~ 42666008 (+) True XLOC_032275
TCONS_00063019 mRNA upstream 5913 42587637 ~ 42598328 (+) True XLOC_032270
TCONS_00063018 mRNA upstream 6230 42545797 ~ 42598011 (+) False XLOC_032270
TCONS_00063017 mRNA upstream 99234 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00063015 mRNA upstream 263022 42338309 ~ 42341219 (+) True XLOC_032267
TCONS_00063011 mRNA upstream 630036 41956355 ~ 41974205 (+) False XLOC_032264
TCONS_00063026 mRNA downstream 55759 42666694 ~ 42690736 (+) False XLOC_032276
TCONS_00063029 mRNA downstream 82353 42693288 ~ 42695664 (+) True XLOC_032277
TCONS_00063030 mRNA downstream 208028 42818963 ~ 42916343 (+) False XLOC_032278
TCONS_00063031 mRNA downstream 208402 42819337 ~ 42915774 (+) False XLOC_032278
TCONS_00063032 mRNA downstream 209293 42820228 ~ 42914497 (+) True XLOC_032278
TCONS_00063014 other upstream 441467 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063013 other upstream 606145 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063008 other upstream 735052 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00062996 other upstream 1110771 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00062995 other upstream 1149368 41454791 ~ 41454873 (+) True XLOC_032256
TCONS_00063021 other downstream 7967 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063022 other downstream 25025 42635960 ~ 42643033 (+) True XLOC_032273
TCONS_00063023 other downstream 35476 42646411 ~ 42653425 (+) True XLOC_032274
TCONS_00063027 other downstream 63678 42674613 ~ 42680610 (+) True XLOC_032276
TCONS_00063042 other downstream 888136 43499071 ~ 43502279 (+) True XLOC_032286

Expression Profile

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