RNA id: TCONS_00063022



Basic Information


Item Value
RNA id TCONS_00063022
length 1296
RNA type processed_transcript
GC content 0.43
exon number 6
gene id XLOC_032273
representative True

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42635960 ~ 42643033 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACGTATATATCTATGGACGCTAACTAGTATTCACGTATCATGCTCAACTCTTAATATTCTTTTACGCACTTTGAGAGTGTTTGCGTTATTTCAGAGAGATATTTAAGCACATATGAAGTAACAGTGCCGTCTGTGTACTAGTTACACAATGCAGCATTTAGCTCGCTCGTAAACATCGCTGCTGTCCTCAGATCATTGTCTGAGCAGAAGTTTCATCATAAGCCATGACTGTCAGATGCTCTTCATCTCAGGAGCTGTATTTTTATATGCTTGATAACAGATATAAGCGAAAAGAGGCTGAATCCAAAGCCCGAGAAGAAGCAGAGAAACAGAGGATCGAACGAGAGAAACACTTCCAGAAGGAGGAGCTGGAACGCTTGGAAAGAAAGAAGcgTCTGGAAGAAATCATGAAGAGGACTCGTAAGAGTGACGCAGGAGCACaggtgagatgtTAATACAGAAAAATCTGTCAGAAGCTCTTCATACTGGTGCGACAAACCAATCACCAATGAGCTCTGTGTCCTGGGACGCAGCACCGGTCATTAACGGAGCTCTGCccactaagcatcagaatggacTGTCCTCCAATGGAGACGCTGCAGACTTTGAGGAGATAATCAAGCTGTCCAATCACAGTGGGAACAGTGGGCAGAGTCAACCGGCTGACGACCCAATCATGGCCTTCGAGGGAGGAGAACCGTTCATGATGAAGGCGAGGCCTATGAAACCTCAACATGTGGCAGAGGTGCTGTGAGAGATGAGATATCAGAGTCTTCTGGATATGAAGAGAAGAAGAGAAGCCTTACTCTACCACCGCTTCCACCCTGATGTGTGCCAAACCAACAAAAACAGACTGCTTTAACTTTAGAAACACAGCCGAGCCGGACGCGCTCAGGAGAAAGTGCCAGAAGACGACCTTAAAGAGAcacttatatacatatacaacgttTGCAAAAAGTCTCTGTCtatttcagtgtgtgtgtcatGGTGCAACATTTGTTGAGTTTCTTTAACAAGTCACCTGCCGATCATGTGGTGCACCTTAAAAGAGTCGCTATATATTGAATTTTAGAAAAGACAACTTGGCTTATCTTTAtgatatgaattattgttgtttttgttgctctTGTTATGATGTATTGTTATCGTTCTTTTAAGTAGAGAAAAAAAGCAAACGAGTGTCTTGAACTATTGCGTTATTTAACGTGTGGCGCATCAGAAGAGGCCGATATTTTGTATGTTAATGTATATTTGCCTGATTATGACAGACCTGTGGAATAAATCTTTATGAAAGGG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154016

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00063020 lncRNA upstream 25025 42604241 ~ 42610935 (+) False XLOC_032271
TCONS_00064929 lncRNA upstream 25025 42608542 ~ 42610935 (+) True XLOC_032271
TCONS_00063016 lncRNA upstream 252514 42383194 ~ 42383446 (+) True XLOC_032268
TCONS_00063010 lncRNA upstream 720947 41909373 ~ 41915013 (+) True XLOC_032263
TCONS_00063009 lncRNA upstream 725490 41909373 ~ 41910470 (+) False XLOC_032263
TCONS_00064931 lncRNA downstream 13680 42656713 ~ 42666008 (+) False XLOC_032275
TCONS_00064930 lncRNA downstream 13680 42656713 ~ 42666008 (+) False XLOC_032275
TCONS_00063024 lncRNA downstream 13689 42656722 ~ 42666008 (+) False XLOC_032275
TCONS_00063025 lncRNA downstream 13732 42656765 ~ 42666008 (+) False XLOC_032275
TCONS_00064932 lncRNA downstream 14016 42657049 ~ 42666008 (+) True XLOC_032275
TCONS_00063019 mRNA upstream 37632 42587637 ~ 42598328 (+) True XLOC_032270
TCONS_00063018 mRNA upstream 37949 42545797 ~ 42598011 (+) False XLOC_032270
TCONS_00063017 mRNA upstream 130953 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00063015 mRNA upstream 294741 42338309 ~ 42341219 (+) True XLOC_032267
TCONS_00063012 mRNA upstream 661755 41957280 ~ 41974205 (+) True XLOC_032264
TCONS_00063026 mRNA downstream 23661 42666694 ~ 42690736 (+) False XLOC_032276
TCONS_00063029 mRNA downstream 50255 42693288 ~ 42695664 (+) True XLOC_032277
TCONS_00063030 mRNA downstream 175930 42818963 ~ 42916343 (+) False XLOC_032278
TCONS_00063031 mRNA downstream 176304 42819337 ~ 42915774 (+) False XLOC_032278
TCONS_00063032 mRNA downstream 177195 42820228 ~ 42914497 (+) True XLOC_032278
TCONS_00063021 other upstream 13308 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063014 other upstream 473186 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063013 other upstream 637864 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063008 other upstream 766771 41853372 ~ 41869189 (+) True XLOC_032262
TCONS_00062996 other upstream 1142490 41463785 ~ 41493470 (+) False XLOC_032257
TCONS_00063023 other downstream 3378 42646411 ~ 42653425 (+) True XLOC_032274
TCONS_00063027 other downstream 31580 42674613 ~ 42680610 (+) True XLOC_032276
TCONS_00063042 other downstream 856038 43499071 ~ 43502279 (+) True XLOC_032286
TCONS_00063044 other downstream 1489935 44132968 ~ 44133082 (+) True XLOC_032289
TCONS_00063059 other downstream 2712376 45355409 ~ 45355525 (+) True XLOC_032298

Expression Profile


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