RNA id: TCONS_00063025


Basic Information

Item Value
RNA id TCONS_00063025
length 1543
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id XLOC_032275
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42656713 ~ 42666008 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGACATTTAACGTATATATCTATGGACGCTAACTAGTATTCACGTCGTATCATGCTCAACTCTTAATACTCTTTTACGCACTTTGAGAGTGTTTGCGTTATTTCAGAGAGATATTTAAGCACATATGAAGTAACAGTGCCATCTGTGTACTATAGCTACACAATGCAGCATTTAGCTCGCTCGTAAACATCGCTGCTGTCCTCAGATCATTGTCTGAGCAGAAGTTTCATCATTAGCCCTGCCTGTCAGATGCTCTTCATCTCAGGAGCTGTATTTTTAGATGCTTGATAACAGATATAAGGTGAGttaatagaacacagccaggaactcttCTGCGCGAGTCAGCGTGACGTGCGTGCGCGGGCTCATCATTTGAATTAAATAACGGACACAAGCAACGGGCGGAACGGTAATGAAAGAGATGGTCTCCTCGCAAGAGAAGCTAGCAGCATTGAATGGGGAAGCTTGCTATTTCTTTCGCTGGAATCTCCAATTGAAAACATCATCGTGTGCGCTTAGACTTCTGTTCCAGTTCTGACTACACACCACTCTGCTTATGTGGATCACTGACTACTATGTTCTCTgaagtgggggaaaccggagcacctggaggaaacccacgcaaactccacacagagacgccaactgatccagccaaggctcgaaccaacgaccttcttgctgtgaggcgccactGCAGCGCAGTACCAGAAgCAGGTGCAGCCAAACTGCGACACAACAGCCACGGAATTTACAGGGCCGTGAGAGATCACCTGTACGGTCTGGCGGTGGCAGACGCAGAGCGGAAAAACTATCtgatgcttttgttgttgttaatgttaaaTTGACCAATAcatgttttgtcattacttttgtCTGCAAATATTaggctaataaataatattttttaaacaaaatgttgaaTTTCTGAATCATGTGAATTTTCTAAAACGTTTATAAAGGTATTTCTCACAACCAAATTTCGACTTAAAATTGACGTATTTTCGACGACATGAAAAAGACGTCTTTTCACCTTTCACTTTCCCACCTGTTTTCCACGTTGTTTGGACGTCTTACAATTACGTTTTTTCGACGACATGAAAAAGACGTCTTTTCACCTTTCACTTTCCCACCTGTTTTCCACGTTGTTTGGACGTCTTACAATTACGTCTTTTCGACGACGTAAAAAAGACGTAGTTTCGTCTTTCACTTTCCCACCTGTTTTCCACGTTGTTTGGACGTCTGACAATGTCGTCTTTTCAACGTCTTTTCGACGAACTATTGCTGGGTGGggagctcatctgtttgtcggaactactagacacaatttttttatcaactataatgtgtttaattagttaatttaaaatttatttcattattccagcaataattgttgagtgaaagaatgcgctagaaatatgcattgcggctccctttattgtacaggcttattgcacttaaacttttttaggttcggctctcgaattagtaaggttatgagtaaatgttatttaaaatatttaaagcctgccatctag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063020 lncRNA upstream 45830 42604241 ~ 42610935 (+) False XLOC_032271
TCONS_00064929 lncRNA upstream 45830 42608542 ~ 42610935 (+) True XLOC_032271
TCONS_00063016 lncRNA upstream 273319 42383194 ~ 42383446 (+) True XLOC_032268
TCONS_00063010 lncRNA upstream 741752 41909373 ~ 41915013 (+) True XLOC_032263
TCONS_00063009 lncRNA upstream 746295 41909373 ~ 41910470 (+) False XLOC_032263
TCONS_00064933 lncRNA downstream 26614 42692622 ~ 42751759 (+) False XLOC_032277
TCONS_00063028 lncRNA downstream 27017 42693025 ~ 42744089 (+) False XLOC_032277
TCONS_00064934 lncRNA downstream 27017 42693025 ~ 42751759 (+) False XLOC_032277
TCONS_00064935 lncRNA downstream 27139 42693147 ~ 42695949 (+) False XLOC_032277
TCONS_00064936 lncRNA downstream 27139 42693147 ~ 42705338 (+) False XLOC_032277
TCONS_00063019 mRNA upstream 58437 42587637 ~ 42598328 (+) True XLOC_032270
TCONS_00063018 mRNA upstream 58754 42545797 ~ 42598011 (+) False XLOC_032270
TCONS_00063017 mRNA upstream 151758 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00063015 mRNA upstream 315546 42338309 ~ 42341219 (+) True XLOC_032267
TCONS_00063012 mRNA upstream 682560 41957280 ~ 41974205 (+) True XLOC_032264
TCONS_00063026 mRNA downstream 686 42666694 ~ 42690736 (+) False XLOC_032276
TCONS_00063029 mRNA downstream 27280 42693288 ~ 42695664 (+) True XLOC_032277
TCONS_00063030 mRNA downstream 152955 42818963 ~ 42916343 (+) False XLOC_032278
TCONS_00063031 mRNA downstream 153329 42819337 ~ 42915774 (+) False XLOC_032278
TCONS_00063032 mRNA downstream 154220 42820228 ~ 42914497 (+) True XLOC_032278
TCONS_00063023 other upstream 3340 42646411 ~ 42653425 (+) True XLOC_032274
TCONS_00063022 other upstream 13732 42635960 ~ 42643033 (+) True XLOC_032273
TCONS_00063021 other upstream 34113 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063014 other upstream 493991 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063013 other upstream 658669 41997963 ~ 41998096 (+) True XLOC_032265
TCONS_00063027 other downstream 8605 42674613 ~ 42680610 (+) True XLOC_032276
TCONS_00063042 other downstream 833063 43499071 ~ 43502279 (+) True XLOC_032286
TCONS_00063044 other downstream 1466960 44132968 ~ 44133082 (+) True XLOC_032289
TCONS_00063059 other downstream 2689401 45355409 ~ 45355525 (+) True XLOC_032298
TCONS_00063061 other downstream 2939272 45605280 ~ 45605396 (+) True XLOC_032300

Expression Profile

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