RNA id: TCONS_00063028


Basic Information

Item Value
RNA id TCONS_00063028
length 1477
lncRNA type sense_over
GC content 0.41
exon number 3
gene id XLOC_032277
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42692622 ~ 42751759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctggaactaaatGTTGCAAGACATCAACcttccagggccgagtttgggcacccctgttttatAGTGTAAAAACGTGATTTCTGAAGGTCAAATATGCTTGCTTGACACCCAAGAACCAATTCTTTCTTTTTCCTGTCACGTGGCATGTTTGAATTTTCTCCAAGCAGCCATGGTGTCTTCAAAAGATTTAGTTTAAACCTCTTACTGAATGGGATTGACTGGAAATTGTCATTTGACAATAAAATGGCTGTTTGGTATGACATGACGCCATGAAGTGTCAACAAACTACTTCCAAGCAGCCATTAAAAGGCATTGGCGCCTTTATAAATAATTCAACCACTTGACTGGATGCTAAATGAATGGAGATGATACAGGACAGAAGGTCTTTGGTTTCCAGGGAGTCCTTCAGGAGGAGGGAGTGTTTGGAGGGTTAAAATCACCTCCTCAAAACAACACCCACCCCTAGACAAACAAAAAGAGAGGCTTAACACCAACCGAGCTGATCTTCCCTCCTCTTTTTCTTCCTCTTCCTCAGACTCGGTGAGAAATTGCAGAGGTTTTCCTGCTCTTTTCTCTCCAGAAACAAAAAGAGGCATTTCTGTGAATCAAAGGCACCCCTCAGGAGTCTGTCTTAGGTCCACCCCGAAATGCCACCATGGAGTTTAAGGGCTCACGGGGGCCTGGAGCAGACAGCAGGTGGAACAGTTCCAGGTTTTGTCCTCATTTGTCAGTCAGTAGCCTAGGAGTGATGTTCTGTTTAGTAGGGAAATGAAGAGAAATGACTTGTTGCCAACCGGAAAAAGTTTTGTCAATGAACGGATGGATGAATTGGGAACAAGGGAGGCACATGGGTTGCAGCATTTACTGAAAGAATCTGTCATGGATATGCTAGACAGAGATGGATTTTAGTGAATAAATGAAGTATATACAGAACAATCATCTCAATTCATTGGTCGCTAATCAAGAGATGACTCCATTCAAGTGTGTGAGAAAGTTCCCTCCATGTGGTTCTGGTCCACGTGACGGGAAAACATGCATGTATGAGAGATAATGTGGCCTAAATGATCAGTTTAATTACTATATGTCTCAAGCTCTATGGCAGCATTAATGTTAACTATAGCATCCTCCAAACATCTACTGTATACTCCTGGGTCAGAATTATCCGAGGAACCTATGATAGTAAATAACATCATTAACCTTTTAGAGTGGGAATGCTTTCCCTTGATTAGCAACCACTGAATAAGCTTGTTGTTGCAGTGTTGAATGACAAATGGATGTAAACATCCTCTTGAGGTAGTCGCTATTGTGATGTTAAACTAGTGGATAGTGATGTTTCAAACACACAAGTGTCCCTCTCCCTAGAAACAGTCAGTTTATACAAGCAGGGAAAATACAGAGATTcgctattttgttttgtttatgctaaTGGACCTTAGTTTTTGTGTGTATAATTGGGTTgacgtttattaaaataaat

Function

GO:

id name namespace
GO:0007051 spindle organization biological_process
GO:0030504 inorganic diphosphate transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064931 lncRNA upstream 27017 42656713 ~ 42666008 (+) False XLOC_032275
TCONS_00064937 lncRNA downstream 597854 43341943 ~ 43347573 (+) False XLOC_032282
TCONS_00063036 lncRNA downstream 598090 43342179 ~ 43347573 (+) True XLOC_032282
TCONS_00064939 lncRNA downstream 754891 43498980 ~ 43546988 (+) False XLOC_032286
TCONS_00064938 lncRNA downstream 754891 43498980 ~ 43546988 (+) False XLOC_032286
TCONS_00064940 lncRNA downstream 754966 43499055 ~ 43502230 (+) False XLOC_032286
TCONS_00063026 mRNA upstream 2289 42666694 ~ 42690736 (+) False XLOC_032276
TCONS_00063019 mRNA upstream 94697 42587637 ~ 42598328 (+) True XLOC_032270
TCONS_00063018 mRNA upstream 95014 42545797 ~ 42598011 (+) False XLOC_032270
TCONS_00063017 mRNA upstream 188018 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00063015 mRNA upstream 351806 42338309 ~ 42341219 (+) True XLOC_032267
TCONS_00063030 mRNA downstream 74874 42818963 ~ 42916343 (+) False XLOC_032278
TCONS_00063031 mRNA downstream 75248 42819337 ~ 42915774 (+) False XLOC_032278
TCONS_00063032 mRNA downstream 76139 42820228 ~ 42914497 (+) True XLOC_032278
TCONS_00063033 mRNA downstream 174844 42918933 ~ 42930302 (+) True XLOC_032279
TCONS_00063034 mRNA downstream 271827 43015916 ~ 43019222 (+) True XLOC_032280
TCONS_00063027 other upstream 12415 42674613 ~ 42680610 (+) True XLOC_032276
TCONS_00063023 other upstream 39600 42646411 ~ 42653425 (+) True XLOC_032274
TCONS_00063022 other upstream 49992 42635960 ~ 42643033 (+) True XLOC_032273
TCONS_00063021 other upstream 70373 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063014 other upstream 530251 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063042 other downstream 754982 43499071 ~ 43502279 (+) True XLOC_032286
TCONS_00063044 other downstream 1388879 44132968 ~ 44133082 (+) True XLOC_032289
TCONS_00063059 other downstream 2611320 45355409 ~ 45355525 (+) True XLOC_032298
TCONS_00063061 other downstream 2861191 45605280 ~ 45605396 (+) True XLOC_032300
TCONS_00063065 other downstream 3188152 45932241 ~ 45933222 (+) False XLOC_032302

Expression Profile

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