RNA id: TCONS_00063031


Basic Information

Item Value
RNA id TCONS_00063031
length 3923
RNA type mRNA
GC content 0.46
exon number 19
gene id XLOC_032278
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42818963 ~ 42916343 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCACGGAATCACAGTCACATAAATTAGTTTAAAGGACCTACTACTTTGTGGACACGTGTATGCCGTTACTTTTAGCCGGACGCATTGTTTTTTCTGACCCTTTTCTTTGCGCTGGATTGCAAATGATTTGTTCACTGGGACACACAGGATCGATTGTCGTGACGGACGTCTTGTAGGACTGATAAATCTCTTGTGGGTTTTATGGATAAAGTGATCATGCAGGGAGCCGGGACTTTGGTGCTGGGGACCCTTCTGGTCTCTGTATTCTCAGCTGTCTCGGTCCACAGCAGCCCTTTGTCTTCCCTGCCACCCGCCTCTGTTCCACGAGTCTTCCTGTCCTTCAAAGagctGAAGTCTACTGGAACAGCCCATCACTTTGCCTTCCTGCTGAACTCGACGGACTACAGAATCCTCCGCATGGACGAGGATCATGATCGCATGTATGTGGGCAGCAAGGATTACATTCTGTCTCTAGACCTGAATGACATCAACAAAGAGCCCCTTATAATTCACTGGCCTGTAGCTCCACAGAAAAGGACTGAATGTGTACTCTCAGGGAAAGACATCAATGGCGAATGTGGTAATTTCATCCGTCTAATCGAGCCGTGGAACCGGACTCACCTGTATGTGTGCGGGACGGGAGCTTACAACCCCATCTGCACCTATGTGGACAGAGGCCAAAGGGCACAGGGTTTTCTGCAAGATCAGATGCCTCGTGCAGGAGGCCGAACCAGTCGAGCTGCTGACCCTAGTGCCTCACCAGAACCATATGCACCCAAGGAATACATTTTCCGACTGGAGCCTGGTAAAGTAGATTCTGGGAAAGGAAAATGCCCCTACGACCCCAAACTCAACAGCGTCTCAGCTTTGATAAATGGCCAGCTTTATGCCGGCGTCTACATCGATTTTATGGGAACAGACTCTGCCATCTTTCGCACGTTGGGCAAACACACGGCAATGAGGACCGACCAGTATAACTCCCGCTGGCTCCACGATCCAACATTTGTCCATGCTCAGCTCATCCCTGATAGTGCAGAAAAGAATGACGACAAGCTGTATTTCTTCTTCCGTGAGAAGGCCTCTGAGATGGGTCAGACTCCCATGGCTCAATCTAGGATTGGCAGAATTTGCCTgAATGATGATGGAGGACACTGCTGTCTGGTGAACAAGTGGAGCACCTTCCTGAAGGCTCGGCTCATCTGCTCTGTCACCGGCTCTGATGGCATCGAGACGCATTTCGATGAGCTCAGGGACGTGTACATCCAGAAGACTCAAGACACAAAGAATCCTGTCATCTACGGCGTCTTTTCCGTGTCCGGGTCTGTGTTTAAAGGCTCAGCAGTATGTGTTTATTCAATGGCTGATGTGCGCATGGTCTTCAATGGGCCTTTCGCTCATAAAGAAGGCCCAAACTACCAATGGGTTGCATACCAGGGCAAAATCCCATACCCTCGCCCAGGAACATGTCCAGGAGGGACGTTTACCCCCAACATGAAGTCTACTAAAGATTACCCAGATGAGGTGATCAACTTCATGCGCACACATCCCACCATGTTCAATGCAGTTTATCCAGTCCACAAGCGCCCCCTGGTGGTACGAACCAACGTGGATTATGAGTTCACCACCATCACTGTGGACCAAGTGGCTGCAGCTGATGGCAACTATGAAGTTCTGTTCTTAGGAACAGACAGGGGAACAGTTCAGAAAGTGATTGTCCTGCCCAGAGATGATCTACAGACTGAAGAGCTGGTTTTGGAGGAGGTGGAGGTCTTCAGAGTTCCAACTTCAATCACTACTATGAAGATTTCTCCAAAACGACAACAGCTGTATGTCAGTTCGGCGGTGGGCGTCACACATCTGGCTCTGCACAGATGTGATGTTTACGGAGAGGCCTGTGCCGACTGCTGCCTGGCCAGAGACCCATACTGTGCCTGGGACGGAAAGTCCTGCTCTCGCTACTCAGCAAACCAAAAAAGGCGGAGTCGAAGGCAAGACGTGAAGTATGGAAACCCTATAAGGCAATGCAGAGGCTACAACTCGAATGCCAATAAGAACACATTGGAGACAGTGCAGTATGGAGTAGAGGGAAGCACAGCCTTTTTGGAGTGTCAGGCCAGATCTCCTCATGTGTCCATCAAGTGGCATTTCCAGAAGGAGAACAGCGACCGGAGAAGAGAGATCCGTTCTGACGGGCGTGTGGTTCGCACGGAACAGGGCCTCCTCCTGCGCTCCCTCCAGCTGTCTGACAGCGGTGTTTACCAGTGCACCTCAACTGAGAAGAACTTCAAACACACCCTTGTCAAACTCCAGCTCGTGGTTCTCTCCGCCCACACAGTCAACAGCATCCAGACTGAAAGCGGCGCCCCGGCCGCCCCACCCCTTCAGTCCAGCGCCTGGACGCCCAGCGCAGAACAATACAAAGACCTCCTGACCATCCTCAGCCAACCTGAGATGGGCCTCATCAACCAGTACTGCCAAGACTACTGGCAGATAGGGGACGACCCCATGGCCCACAAGAAGAAGGACCTCAAGGAGCTCCAGAAGGACCTGCGGAAGCCTCGAAATAGGAGACACCACCAGGAGCAGAGCAGCATGGCTGAGACATGAGGAAACTTGCATAATAATCCACCAACAACCATCATGGCCGAGGAGAACATAAACAATACGTTTCTCTTGAAAGCGCATAGTATTTATTGTAGGCTTGTACATAGTTAGATTCTGTGGATATCTTTGTATGGGAATAgcgcaacaacaacaacgaaaaaaaaaagatgaaaacgtTTTGTGTATAGATCTGTGCAAATATTTTGTTAGCATTGTTACTTCCCTTCCGATATATTTATTACAGCGGTATTCATCCGTCATCCACATTATATGACTGTTATCATGAAACGTTGTGTATATATTACAGTTTCAGTGAGCGGAGAGTTGGACATCTGATGGACAGTTTGACTGCGTTTCGATGTTTTGATACCGGAGTGACTCTTTTAGTCGAGCACGTGTTCTCAGTTAGATGCGAATATTTGGCGCATCTACATTTTTCTGTGACCTCCCCTGAAAAAAAGACTTTAGTATCATCAGAAACACTCATCTTTTAATCTTCTTGATCTTCCATATGTTGCTATGCTAATGCGTGTTAAATATAAAGTCGATTCTGTGTGTTATATATTTGGTTTATGATCGATTACAGCCTcctgtacagtatgtatgtacatcactttttgttttcctttatataaatatgtattattgcaCGCAAAGGAACTGAAAACATGTCCATCTCTTTGCAGAGCAGAATggttttttttggtttttgtttttgtttgttttttaagagaTATGTACCTCTTCAgtcattttcagaaaaaaaactaaataaataaaagtccaAGCAAGCTCCTCTAAACATTTGATCATTTGGACAAGTTAAAACGTCTAGAATGAATCTTTAGGGGGCTTGATTGAGTTTGCATGAACTGTATTTGTACTGTACAGGTATGTAGTCAAATTCTGGATATGTGGCTGTGTTGCTGTATGGTTTTTAACATAGTGaatggagagaaagagagcgagagagactgTTTTTTTGAAAACAGAGGACTTTGCTAAACTAGTGATGGAATCAAGCACAATTACCTGACGTGTCTGTTTCACCTCCGTTGTGTTTTCTCTACAAGCATAGCAAAACGGGCTGTGTGAAATGATTGTTGTATACgtgtattttgtttcttttttgttgtaaGACATTACCCATCACTGTGGTTTGTCctctttgttttgtcttttttttttagaatattctAATGTGAAAAGACCCTAAATTAGATGTTATGAACAGTTAATGTtatagtaatgtattttttatttgttttcttttccatCTTTGTCGTTGACTaattaaagttatatattttataacaaa

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function
GO:0038191 neuropilin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050513-1 Enables neuropilin binding activity. Acts upstream of or within neural crest cell migration. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain; head; pectoral fin; and somite. Orthologous to human SEMA3F (semaphorin 3F).

Ensembl:

ensembl_id ENSDART00000046498

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064933 lncRNA upstream 67578 42692622 ~ 42751759 (+) False XLOC_032277
TCONS_00064934 lncRNA upstream 67578 42693025 ~ 42751759 (+) False XLOC_032277
TCONS_00063028 lncRNA upstream 75248 42693025 ~ 42744089 (+) False XLOC_032277
TCONS_00064936 lncRNA upstream 113999 42693147 ~ 42705338 (+) False XLOC_032277
TCONS_00064935 lncRNA upstream 123388 42693147 ~ 42695949 (+) False XLOC_032277
TCONS_00064937 lncRNA downstream 426169 43341943 ~ 43347573 (+) False XLOC_032282
TCONS_00063036 lncRNA downstream 426405 43342179 ~ 43347573 (+) True XLOC_032282
TCONS_00064939 lncRNA downstream 583206 43498980 ~ 43546988 (+) False XLOC_032286
TCONS_00064938 lncRNA downstream 583206 43498980 ~ 43546988 (+) False XLOC_032286
TCONS_00064940 lncRNA downstream 583281 43499055 ~ 43502230 (+) False XLOC_032286
TCONS_00063029 mRNA upstream 123673 42693288 ~ 42695664 (+) True XLOC_032277
TCONS_00063026 mRNA upstream 128601 42666694 ~ 42690736 (+) False XLOC_032276
TCONS_00063019 mRNA upstream 221009 42587637 ~ 42598328 (+) True XLOC_032270
TCONS_00063018 mRNA upstream 221326 42545797 ~ 42598011 (+) False XLOC_032270
TCONS_00063017 mRNA upstream 314330 42475730 ~ 42505007 (+) True XLOC_032269
TCONS_00063033 mRNA downstream 3159 42918933 ~ 42930302 (+) True XLOC_032279
TCONS_00063034 mRNA downstream 100142 43015916 ~ 43019222 (+) True XLOC_032280
TCONS_00063035 mRNA downstream 318439 43234213 ~ 43241631 (+) True XLOC_032281
TCONS_00063037 mRNA downstream 437497 43353271 ~ 43361226 (+) True XLOC_032283
TCONS_00063038 mRNA downstream 474613 43390387 ~ 43427737 (+) False XLOC_032284
TCONS_00063027 other upstream 138727 42674613 ~ 42680610 (+) True XLOC_032276
TCONS_00063023 other upstream 165912 42646411 ~ 42653425 (+) True XLOC_032274
TCONS_00063022 other upstream 176304 42635960 ~ 42643033 (+) True XLOC_032273
TCONS_00063021 other upstream 196685 42618902 ~ 42622652 (+) True XLOC_032272
TCONS_00063014 other upstream 656563 42162650 ~ 42162774 (+) True XLOC_032266
TCONS_00063042 other downstream 583297 43499071 ~ 43502279 (+) True XLOC_032286
TCONS_00063044 other downstream 1217194 44132968 ~ 44133082 (+) True XLOC_032289
TCONS_00063059 other downstream 2439635 45355409 ~ 45355525 (+) True XLOC_032298
TCONS_00063061 other downstream 2689506 45605280 ~ 45605396 (+) True XLOC_032300
TCONS_00063065 other downstream 3016467 45932241 ~ 45933222 (+) False XLOC_032302

Expression Profile

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