RNA id: TCONS_00063049


Basic Information

Item Value
RNA id TCONS_00063049
length 4414
RNA type mRNA
GC content 0.48
exon number 31
gene id XLOC_032294
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 44812444 ~ 44977428 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCATATCTTAATGTTTTGTGTCTATCTGATTTCATTAAAAAGTATTTTCATACTATTTGTGAACATGTTGTAACCCATTATTCACAAAACTGAGGAACAGTATGTGAATCAGTATCCTATAAATACCCACAAGACCTCTGAGAAATTCATAGTCACCAATTGTCATATTGTAGTAGAGTAGAGTCACTGTCATTGAAGAGGGGGTGTGTGCTGTTAACCCCTCCCGGTCACAATGTAGCGAAGTTGTGGAGGGGTTTTCTCGGTTGCCATGGATTTCTAAAAGCTATTGACTGCGTTCAGCCTTTCACTGAACGTATTTGTAAGAGAAACGCACCACTGAAGTAAAAGCATCATCGCTCCAGACATTCTGCTGTCGCGCGCTGACTAACAGCTCCAGCTCTTCCCGCAAAAAACTCCTGTGAAAGGTAGCGAGACCACAGCCTGGGTTGGAGTGAGATGCACTGACTCCTGGCAGACTGCAGATTTCCCTGTCATCCTCCGCTCTCGCCTCTGAAACTGTGGCCAGTCATGCGGTTGTTACGGAAAACCCTGCTTCTTTTGGCTGCTTGCCTTAATATGAGCAGCAGGTATCAAACTAACGCCCTGGAAATTCCACTTGATGTTTTAGAGCGCATGAACATGGAGCAGCTGCCCACAATTACAGAGTACTCTCCTGCCTCGCTCATCGCCTTCCCTTTCGAAGAGAGCTTCCCTGTGAAGTGTGAGGCCACAGGAAACCCTGAACCAGAATTCAGGTGGACAAAGAACGGCCAAGACTTTGATCCGTATCAGGACACCAGATTGATAACGTTAGATGATTCCGGAACATTCATCATTCCCAATACCGGAAATCTCACTGAATTCCAGGGCATTTATCGCTGTTTTGCAACCAACAAATTGGGGACAGCCATGTCAGAAGAAATTGAGTTCATTATTCCTAATGTCCCAAAGTTCCCCAAAGAGATCATCGATCCGATTGAGGTGATGGaaggtcagtcagtcattctagAGTGCAATCCACCTACAGGGATCCCTCCATTGCAAATCTACTGGATGACAATAAGTCTACAGCACATCGAGCAGGACGAAAGAGTGTCAGTGGGTCTGAATGGAAACCTGTACTTCTCAAACACCGTTGAAACTGATAGCCGCAGAGACTATTGCTGCTTTGCTGCCTTCCCTCGCATCCGAACTATCGTCCAGAAAACCGCTATGTCCATGGTGGTCAAAAGCAACAAGTTAATGAAGGACTCAAGCTCTGGTAGCGGCAGAGGTTATGCAAACTCCCTGTTGGAGAGGAAGCCCAGCCTGTTGGCGCCTACAGGAATGGAGTCACATACACGCCTGGTGAAAGGTGAAGATCTTCAGTTGGAGTGTATAGCAGAGGGATTCCCCACGCCAAAGGTGGAATGGGTTAAAATAGGCTTCAACAAGCTTCCAGAAAGGGTTGTTGTGGAGAGTCATGGGAAGCTGCTCACTGTTGAGATGGTGAATGAGGAGGATGAAGGCAAATATATGTGCAGAGCCAAAAATCCCCACGGAGAGGTGGTGCATCATTTTCATGTGACAGTAGAGGAGCCTCCTGAGTTTGAGATTGAACCTCAAAGCCAACTGGTGACGATTGGAGCTGATGTATTGATCAAGTGTGTCGTGAAAGGAAATCCTCAACCTACTGTAGGATGGAGAGTTAACGGGCGGCCACTGAACGAGGTCCCAACATCCAACAGGAAGATCTTGAAAGATGGCACAATTTCCATCCACAATGCAAACCCAGAAAACAGTGCTGTTTACCAATGCGAGGCAACCAACAAACACGGCACCATCCTGGCCAATGCCAACATCATGATTATGAACATCCAGCCGCTGATcttaacagaaaacaatctgcaATATATGGCGGTGGAGGGGAAAAGTGTGGTCATGCACTGCAAGGTCTTCAGCTCTCCAGCCTCCAGCATTACGTGGAGTAAAGCTGACAGTGCAAATGCAGTGGAAGGAGAACGGTTTACTGTTCACCAGAATGGTTCACTGGAGATCCATAATGTGATGAAAGAGGACATGGGAGAGTATTCTTGCTTTGCACAAAACACCGAAGGCAAAGTTGCCATTGCTGCAACACTTGAAGTCAAAGATCCCACCAGAATAGTCGATCCTCCACGTGATTTGCGGGTTTTGGCGGGAACCACTATTCAGTTTTCATGCCAGCCAGAGTTTGATCCCTCTTTTGGTGATGACTTTGAAGTCCTGTGGGAGAAAGATGGCATTGCCCTCAACGGCAGCGAAGATGGAAGATATATCCTGGAAGACGGAGTGCTGGAGATCATTAATGTGAGTTTCGGAGACCAGGGCTTTTACGCGTGTGTGGCCAGAACGCCCGTTGACCAAGACGTTGCAGTGGCACAGCTTTCAGTCGTGGATGTTCCTGATCCACCAGAGGATGTGATACTGTCTGAACATAATGGCCGAAGTGTGAAACTGCAGTGGACTCCGGGAGATGACCATAATAGCTCCATTACCGAGTTTGTTCTAGAGTTTGAAGAAAGCCAACATGAGCCAGGCAGCTGGAGGGAGATGATGAGAGTCCCAGGAAACCATCACTCAGCTCCGCTGAAGCTTTATGGACATGTGGACTACCGCTTCAGAGTCTCCGCCATCAACGAGGTGGGCAAAGGTCGGCCAAGCCAGTCCACTGAAAGATACAAAACTCCAGCATCAGCACCCGACAAGAACCCAGAAAATATCAAGATCGAAGCTCATTTGCCACATGAAATGGATATCAACTGGGAGCCGTTGTCACCTATTGAACACAACGGGCCTGGTCTGGAGTACAAAGTGAGCTACAGGAGACATGGCAGCGATGAAGACTGGACGGAGCGCATGGTGAAGAGGCACTCATTTCTGGTCAAAAACACCCCGACGTTCGTCCTTTACGAGATCAAAATTCAGGCCAAGAACCACGCGGGCTGGGGTCCGGACCCTAAAATAATAACAGCGTACTCGGGAGAGGATTTCCCCTCAGCAGCTCCAGATGATGTAGCCGTAGAAGTGTTGAACAACACTATGGTGAAGGTCAGATGGGAACATGTTCACAAGGACAAAATACATGGACATCTGGGTGGCTACAGGGTGAGCTGGTGGAGGCTTCGTAGTCTGCTGGACTCAAAGAAAACACACGGCGACAAGCACACATTGACATTCTCAGGCGAGAGGAACCATGCGGTGGTCACAGGTCTTAAGCCGTTCTCCGAATACAGCCTCATTGTCATGGCCTTTAACAGCAGAGGAAACGGTCCTGGCAGTCATTCGGTCAACTTCAAAACCCCTGAGGGAGTTCCTGGTCAAGCAGCTGCTTTCAGTGCTACAAACATCCAGAAGCACAAGGTCACCTTGACCTGGTCTCCTCCAGTTGACGCAAATGGAGTCCTAATTGGCTACATCCTCCAATATCAGCTAATAAACAACACAGAGGAACTAGGCCCTCTGATGACACTCAACATCTCCGCCGACAGCAATAAGCAGCACCTCGAAAACCTGGAAGCCCTGAGCAAATACAAATTTTACCTTCGGTGTTGCACGCGGGTGGGCTGCGGTCCTGCGGTCAGCGAGGAGCGCACCACCGTCCCTGAAGCCACTTCAACAGATGTGGCCTCTTTCAACATCAgaaAATCCAGCTCACGATTTCCTCCAAGAAAAACCACTGTTTCCCCTGTGGCTAATGCTACTCTTTCTTCTATAGCGGTGTTGAATATTAGCACCTCAGTTAGTCACAACTATGCAAATATCAGCTGGATTCCAGGCACAGAACAGACGGAGTCAGAGTTATATGTTGCCTTTATGAACAACCGTGAAGGTAACTGGAAGATATCCGACATGCTAAACTCTTCTAAGACTTTCCACATCATTGAAGGGCTCGAACCTGGAACCGAATACACAGTGCGTCTTATGACAAAAAGCTGGGTTGATAATTCTAGTATTTTCGAAGACGTTATCAGGACCAGGGCCAAAGGTCTGGCCAGCATTCATGGAAGCATCTCAAACCAGGGATGGTTCATCGGACTCATGTGTGCCATAGCGCTTCTCACCCTCATTGTGCTCATAGCGTGCTTTGTCAACCGAAACAAAGGCGGCAAATACTCAGtaaaAGAGAAGGAAGACCTCCACCCCGACCTGGAGTCCCAGGGCATAAATGATGACACCTTCTGTGAATACAGTGATAATGATGAGAAACCGCTGAAAAGCAGCCAGCATTCATTGAATGGCGACTTGAAAGGAGGAGACAGCGGAGACAGCATGGTGGACTACTGTGATGAGGACGCTCACTTCAACGAGGACGGCTCTTTTATCGGAGAATACTCTGGACGCAAGGACAGGGCCTCCATGGAAATCAAGGGAAACAATCAGAGCACAGCGTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091105-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CHL1 (cell adhesion molecule L1 like).

Ensembl:

ensembl_id ENSDART00000164653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064947 lncRNA upstream 6856 44400764 ~ 44805588 (+) False XLOC_032292
TCONS_00064681 lncRNA upstream 14885 44721192 ~ 44797559 (+) True XLOC_032293
TCONS_00064945 lncRNA upstream 91940 44400642 ~ 44720504 (+) False XLOC_032292
TCONS_00064946 lncRNA upstream 91940 44400747 ~ 44720504 (+) False XLOC_032292
TCONS_00064948 lncRNA upstream 91940 44486080 ~ 44720504 (+) True XLOC_032292
TCONS_00064682 lncRNA downstream 10200 44987628 ~ 45016837 (+) False XLOC_032295
TCONS_00064949 lncRNA downstream 10200 44987628 ~ 45083289 (+) False XLOC_032295
TCONS_00064950 lncRNA downstream 10255 44987683 ~ 45083289 (+) True XLOC_032295
TCONS_00063063 lncRNA downstream 941553 45918981 ~ 45922790 (+) False XLOC_032301
TCONS_00063068 lncRNA downstream 957339 45934767 ~ 45936653 (+) True XLOC_032303
TCONS_00063046 mRNA upstream 603054 44197099 ~ 44209390 (+) False XLOC_032291
TCONS_00063047 mRNA upstream 604773 44197348 ~ 44207671 (+) True XLOC_032291
TCONS_00063045 mRNA upstream 618704 44163727 ~ 44193740 (+) True XLOC_032290
TCONS_00063043 mRNA upstream 905123 43903209 ~ 43907321 (+) True XLOC_032288
TCONS_00063041 mRNA upstream 1337687 43450221 ~ 43474757 (+) True XLOC_032285
TCONS_00063054 mRNA downstream 137185 45114613 ~ 45327481 (+) False XLOC_032296
TCONS_00063055 mRNA downstream 137246 45114674 ~ 45328699 (+) False XLOC_032296
TCONS_00063056 mRNA downstream 323318 45300746 ~ 45328910 (+) True XLOC_032296
TCONS_00063057 mRNA downstream 369380 45346808 ~ 45376758 (+) False XLOC_032297
TCONS_00063058 mRNA downstream 369791 45347219 ~ 45376758 (+) True XLOC_032297
TCONS_00063044 other upstream 679362 44132968 ~ 44133082 (+) True XLOC_032289
TCONS_00063042 other upstream 1310165 43499071 ~ 43502279 (+) True XLOC_032286
TCONS_00063027 other upstream 2131834 42674613 ~ 42680610 (+) True XLOC_032276
TCONS_00063023 other upstream 2159019 42646411 ~ 42653425 (+) True XLOC_032274
TCONS_00063022 other upstream 2169411 42635960 ~ 42643033 (+) True XLOC_032273
TCONS_00063059 other downstream 377981 45355409 ~ 45355525 (+) True XLOC_032298
TCONS_00063061 other downstream 627852 45605280 ~ 45605396 (+) True XLOC_032300
TCONS_00063065 other downstream 954813 45932241 ~ 45933222 (+) False XLOC_032302
TCONS_00063069 other downstream 1048418 46025846 ~ 46025963 (+) True XLOC_032304
TCONS_00063090 other downstream 1772078 46749506 ~ 46749624 (+) True XLOC_032314

Expression Profile

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