RNA id: TCONS_00063079


Basic Information

Item Value
RNA id TCONS_00063079
length 5449
RNA type mRNA
GC content 0.47
exon number 29
gene id XLOC_032309
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46406565 ~ 46431597 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGAGGAGGTGGGACTTTGCTAGCCATCGACGCTAACTGCTGGCTATCAGTTGCTGCTCTGTTGTTACAGAAGGATTATTCCTAACTGCGCCAATATCGTCGCGATAATACGGGTACTGTCTCAATGGGCTCCAAGAGAAGACGAGCCACCTCTCCCTCCAGCAGTGCCAGCGGAGGAGACTTTGACGATGCCAGCTCATCCACGCCAGTCAGTGGATGGAAGAGGAGGAGAGCCTCCAATGCTCCTTCTGTTGATCAAATTGCTGTGTGCCATGAATTGTACAACACTGTTAGAGATTATAAAGATGATCAAGGCAGACAGATCTGTGAGCTCTTCGTTCGTGCACCAAAGAGGAGAAATCAGCCTGATTATTATGAAATAGTGAGCCAGCCTATAGACATGATGAAAATACAGCAGAAGCTCAGGGCAGAGGAATACCAGGATGTGGAACAGTTTTCAGCTGACTTTCATCTGCTAATTAATAACACCAAAGCTTACTATCAGGCTGACAGTGCAGAGCACAGAGCGGCATCTAAGCTTTTGAACGTCTTCCTATCTGCCAAGAATGAACTGCTGCAGGGTGGGGATGGAGAAGAGGCTGAGGATGATGAGGAAAGTGAAGATGCGGAGAACACAAACGCTTCTATGGAGGAGGAGAGACCACCAAGCTATTTAAAAGCCATACTGGAGCAGCTCTTGGAGGCCATCGCATCCTGCACTGATTCCTCAGGGAGGCTTGTTAGTGAGCTCTTCCAAAAACTTCCTTCCAAACTGcATTATCCAGACTACTATGCTGTCATAAAAGAGCCAATAGACCTACGCGCTGTGGCTCAGAAGATCCAGGGGGGACATTATAAATCCATCAGTGCCATGGCCAAGGACATTGATCTTTTGGTAAAAAATGCCAAAACCTACAATGAGCCAGGATCTCAAGTTTTCAAGGATGCTAACACAATTAAGAAAGTGTTTGCCCAGAGGAAGATCGAGATCGAGCAGGCTGAACCCACTAAAACCAGCCTCCGCATTAgAAACCGGAGGTCTGCTCAAGGTGATCGTCTGTCTGCCATCACCATGGCTCTTCAGGCTGGATCTGAAAGTGATGAAGACTCCATTCTCACAGggaCTGTGCGTTATGACACTGGAGAAACCGAGGCCGATTGTGGTCTCAGTGCAGGTGATCCCATCCTTCTTTTGTATCAGGCAGTGCGAGGAGCAAGAAGTGTTCAAGGCCTGCTCCTCTCTGAGCCCTTTCTCCAGCTGCCCTCGAGAAGGGAATACCCAGATTACTACCATCAGATCAAAAACCCCATCTCTCTGCAGCAAATCAGGGAAAAAATGAAGAATGGCGATTATGAAGCAGTCGAGCAGATTGAGGCTGATCTCTCTGTCATGTTTGAGAACGCCAGACGCTACAACATGCCTAACTCCACCATATACAAACGTGCACAGAGACTACAGCTCATAATGCAGcaaaagaAAAGAGAGTTTCGAGATGATGATGAAGGAGATGTCTCTACTGCTAATTCTGATGTGGGAAGTAGTAAAAAGAAAAGCCACAAGAAGAGCGCCAAGAAAAATCGAATGAAGATGCTGTATGCTGTGCTGACCGATGCCCGTGAGCCAGGCTCTGGACGGCGACTTTGTGACCTCTTCATGGTGAAGCCTTTAAAGAAGGACTACCCAGATTACTACAAAATTATTCAAGATCCAATGGACATGCGTACCATTGAGAACAACATCCGCACTGAGCGTTATAACAACGAGGATGCACTTATGGAGGACATGAAGCTTATGTTTCGCAATGCCCGCCACTATAATGAGGAGGGATCTCAGGTTTATAATGATGCAAATGTCTTGGAGAAGATGGTTAAGGATAAACAGAAGGAGCTTGGCCCTGCTCCAGAGGAAGATGACGTTGGCTCTCCCAAACTCAAGCTTCGCCGTAGTGGAGTTGCAGTCTCCCCTAAAAAGGCTCGCATCCAAACTACACCACTCCAGCAGAAGCTCAGCGAGCTCTACGAAGCTGTTCGCAACTTCACAGACAATCGTGGCCGTCGTCTCAGCACCGTTTTCCTGCGGCTGCCATCCCGTTCTGAACTGCCTGACTATTACGCTGCTATTAAGCGTCCAATCGACATGGAGCGAATACGCAGCTACATGGTGCAGGGACGCTACCAGGATGTTGATTCACTGGCAGAAGACTTCATCCTCATGTTCAACAATGCTTGCACATACAATGAGCCAGAGTCTTTAATATATCGTGATGCTCTGTTGCTCCATCGAGCATTTCTGGAAGCTCGTAGACGGATTGAGGAAGAGGAGAATGGAGATGAAGGTGGTCTGGGGGGTTTGTCGGTTGCCTCTCTTGTGCGTGAGCTCATCCGAAACCTCTTTGTGTCAATGATGGGGCACCAGGATGACGAAGGCCGATGCTATAGTGACTCCTTGGCGGAGGTGCCTGCAATCGACCCAGCTAACCCAGATGATCCACCCCTTACTTTAGAGATCATTCGCAATAATGTGGATAGTGGCCGCTACCGGAGACTGGATGTCTTCCAGGAGCATGTGTTCGAGGTGCTGGAGAAAGCTAGACGTCTCAACAGGACTGATTCTGAGATCTTTGAGGATTCTGTGGAGCTGCAGCATTTCTTTGTGAAGATCCGTGATGAGCTGTGCAAAAATGGTGAAATCCTGCTGACCCCAGCACTGAGCTACACATCCAAACATCTGCATTCAGACATAGATCAAGAAAAGCGAGAGAAACTGCCCCAGGAAATTGAGGAAGACCAACTGAAACGGGAGGAGGATAAAAAAGCTCTTCCAGAAGGGGACAAAGCAGAGGGTCCTGCGGAAGGTGGCCAGTGGCCATCAGGTTCTCAAAGCTCTTATAGTCAGGACTGCAGTTTTGAAAACAACACCTACAGCATAGGAGACTACGTATATGTTCAGCCCGCAGAAGCAAATTTACAACCCCACGTTGTCTGCATTGAGAAGCTCTGGAAAGATGAATCTGGTCAGCAGTGGATGTATGGATGTTGGTTTTATCGTCCAGAGGAAACCTTTCATCTGGCAACACGCAAGTTCCTGGAGAAGGAGATTTTTAAAAGTGACTACAACAACCGCGTGCCTTTCAGCAAGATCCTGGGCAAGTGCTTTGTGTTGTTTGTAAAGGATTATTTTAAGTTGCAACCAGAAGGCTTTAAACCCGAAGACGTGTATGTCTGCGAATCCCGATACACTGTTAGGACCAAAGCCTTCAAGAAGATCAAAATATGGTCCATGCCACCCAACTCTGTCAAACTGCTCCCCAGAGAGGTTCCTTTACCTGTAGTTCGAGTCGCCTCCATGTTTGTCGGTGCGAAAGACAAAGCAGCTGACCTTCCTGATGGAGAGAGTGGTGGATTCATTGAGAAGGAGCGAGAAGACGTTCCAGTTGAAGTTCCCAACGGGGAGCTGGGTTGCCAGTATTATGAACAGCTCCGCTATAATGATATGTGGCTCAAGTTGGGCGACTGTGTTTACATACGCTCCCATGGGCTGGTGCGACCACGAGTTGGCAGGATTGAGAAGATGTGGCTGCGGGATGGAGCTGCATTTTTCTTTGGACCCATCTTCATCCACCCTGAAGAAACCGAACACGAGCCGACAAAGATGTTCTACAAACGTGAAGTTTTCCTCAGCAGCCTGGAAGAGAACTGTCCTATGACCTGTGTTTTGAGGAAATGTGTGGTGTCTTCCTTTAAGGACTTCCTTTCCTGCAGGCCAACTGAGTGTCCAGAGGAAGATGTGCTTCTGTTTGAAAGTCGCTATATTGAGAGCGAAAAGCAGATGAAGAAGTTTAAAGCCCTTAAACGTTTCTCCCTCTCAGCCAAAGTGGTTGATGATGAGATCTTCTATTTCAGAAAACCTATCGTACCTCAGAAGGTGCCATCTCCCCTGCTAGATAAGAAGATTGAGGAGCTAGAGGCTAAGTTTGCGGACATGGAGGATCTGGATGATGATATGGATGACCTAGATGATGACGACGAAGAAGCAGCCGCAACGCCCTCAATGCCACCCAGTCAGGCGTCCACAACAAGTGACATGGATATGCCTTACACACCACCACAGTCCACACCAAAGATAAAGGGTATGTCCAAAAAGGAAGGAGCCAAGCGTAAGATCAACATGAGCGGCTACATCCTGTTTAGCAGTGAAGTGAGGTCTCTAATAAAGGCTCGTCACCCTGATTTCTCTTTCGGAGAGCTGAGTCGTCTGGTGGGCACAGAATGGAGGAATCTGGAAGCTACTAAGAAGGCGGAATATGAAGAACGGGCAGCTAAACTGGTAGAACAGCAGGAGCGGGAGAGGGTCCTTCAGCAGcagcatcaacaacaacaacaacagcagcagcagcagcaacaacaggcTTCCCCAAGAGCAGGTGTGATGGTCCCAGGAATGAATGGAAGCCCTGGTCCCGGAAACCCGTATGGCATGCAGATGGCTGGATATGGACCAGGACAGCAAGCTCCACCCCCATATCCAGGTCAAGGTCAACCAGGCCATCAACAGCCAGCCCCACCTATTTTTGTTGCTCCGCCTCCAAAACCCCAGCGTCTCCTGCATTCAGAGGCGTATCTGAAGTACATTGAGGGCCTCAGTGCTGAATCCTCCACAGTTAGCAAATGGGACCAGAGCCTTAAGGCACAGAGAAAAGACTGCCGGCTTAGTAGGGAACAGGAGAGTCATCTCCCTACTCACTGGCTGAAAAGCAAAGGCGCTCACACCACGATGGCCGATGCTTTATGGAGACTCCGAGACCTGATGATGAAAGACACGCTCAACATCCGACAGGCGTACAACCTTTAAACCTTTACCTTTTACCCTAAACTCTCAGGACTCTAATTTATGCAAGACTTTTCTCCAACCAAATCTTTCCCATCATGACTCAAGATGTGATCAAGTGTTAATGTACTGTCGCAAAAGTGCTTCAGCAATAATTATATCtatcagttgtgtgtgtgtaaatgcgtgtgtgaagagaaaaataaacattttcccaCCTCTTTTGATATATATATGGAGCCCTGGAAAGAAGTCACACTTTTTTAATTCATAACTAACATGGATTTGATATTTGTCATTTGGACTGTTACCTCAATTAAGGTTGAGTTTATGAATACTACATCACAAGTCTTCACAAAGTTTTACATCTATGACTATTCTAAAATGCTTAATATGAGTTGTTGAAGAACACAGTAGCATTTTATAaagatgttttctttttatacGGAGGTAAAACTACATGAGCTCCTACTTATTTTAATGATAATGCAATTTGTTATTTTTACACTGTGTACATACAAAAAAATTGTGTGAACTGTTGCTTATTGAACActgctgcattaaaaaaaagacaaaactgtGTCAATTACACCAATAAACGGCATTACAGATGGATAAA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0005634 nucleus cellular_component
GO:0016586 RSC-type complex cellular_component
GO:0070577 lysine-acetylated histone binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0015616 DNA translocase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010501-3 Predicted to enable chromatin binding activity. Predicted to be involved in ATP-dependent chromatin remodeling. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of RSC-type complex.

Ensembl:

ensembl_id ENSDART00000132845

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063073 lncRNA upstream 86039 46309736 ~ 46320528 (+) True XLOC_032306
TCONS_00063070 lncRNA upstream 144445 46258820 ~ 46262122 (+) False XLOC_032305
TCONS_00063068 lncRNA upstream 469914 45934767 ~ 45936653 (+) True XLOC_032303
TCONS_00063063 lncRNA upstream 483777 45918981 ~ 45922790 (+) False XLOC_032301
TCONS_00064950 lncRNA upstream 1323278 44987683 ~ 45083289 (+) True XLOC_032295
TCONS_00063089 lncRNA downstream 266317 46697914 ~ 46706578 (+) True XLOC_032313
TCONS_00064951 lncRNA downstream 339098 46770695 ~ 46863211 (+) False XLOC_032315
TCONS_00064952 lncRNA downstream 339098 46770695 ~ 46921102 (+) False XLOC_032315
TCONS_00064953 lncRNA downstream 339106 46770703 ~ 46849362 (+) False XLOC_032315
TCONS_00064954 lncRNA downstream 339106 46770703 ~ 46866582 (+) False XLOC_032315
TCONS_00063076 mRNA upstream 59589 46341306 ~ 46346978 (+) True XLOC_032308
TCONS_00063075 mRNA upstream 69471 46320693 ~ 46337096 (+) True XLOC_032307
TCONS_00063074 mRNA upstream 70378 46320693 ~ 46336189 (+) False XLOC_032307
TCONS_00063071 mRNA upstream 97507 46258866 ~ 46309060 (+) False XLOC_032305
TCONS_00063083 mRNA downstream 251 46431848 ~ 46454823 (+) False XLOC_032310
TCONS_00063084 mRNA downstream 257 46431854 ~ 46440057 (+) False XLOC_032310
TCONS_00063085 mRNA downstream 277 46431874 ~ 46454820 (+) True XLOC_032310
TCONS_00063086 mRNA downstream 49427 46481024 ~ 46494084 (+) True XLOC_032311
TCONS_00063087 mRNA downstream 237120 46668717 ~ 46687079 (+) True XLOC_032312
TCONS_00063069 other upstream 380604 46025846 ~ 46025963 (+) True XLOC_032304
TCONS_00063065 other upstream 473345 45932241 ~ 45933222 (+) False XLOC_032302
TCONS_00063061 other upstream 801171 45605280 ~ 45605396 (+) True XLOC_032300
TCONS_00063059 other upstream 1051042 45355409 ~ 45355525 (+) True XLOC_032298
TCONS_00063044 other upstream 2273485 44132968 ~ 44133082 (+) True XLOC_032289
TCONS_00063090 other downstream 317909 46749506 ~ 46749624 (+) True XLOC_032314
TCONS_00063091 other downstream 438587 46870184 ~ 46870298 (+) True XLOC_032316
TCONS_00063092 other downstream 846542 47278139 ~ 47278257 (+) True XLOC_032318
TCONS_00063095 other downstream 1036313 47467910 ~ 47467992 (+) True XLOC_032320
TCONS_00063098 other downstream 1543282 47974879 ~ 47975014 (+) True XLOC_032322

Expression Profile

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