RNA id: TCONS_00064953


Basic Information

Item Value
RNA id TCONS_00064953
length 608
lncRNA type read_through
GC content 0.47
exon number 4
gene id XLOC_032315
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46770695 ~ 46975247 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGTTCTTAAATTTGATTCAAGCGCGGTAAATCTAAAAGCACGCGCGAGCTCTTGGCAAATGTTTTTGCGACTCGACAAACATTCTGTTTCTTTACGATAAATACCAGTGTTGAGTACGACGTGAAGTGTTTGTACAGTCATAGGATCGTCAAGACAGTGTTGGTTTCAGGGGTTTACCAAGCTTGACGTGCCCAGACAGCTTGTCTCAAAGTCTGGAGCCAGGCAAATGGCAAGGACCTGTGCTTGAATTGGCCTGGAGACATCTCTGGACTTCGGGAAATTGAGTAAACACAAATGTCACCCTCCGACCTGAAACACCTCCCGATATCACAAGATGAAGGTTCCCAGGAGACCGTCAGTGTTCCAGGGACATTTTCTTCCAGCTCCACTGGGCCAGGGGGTTTGGGATCATCTGCAAACATACCAGTAATGGAATAGATGCCAGAATCTGAACGCTCCGCCGAAGCAATCAGGAGTTGGGACATCCCATCTGCATTGCTTATGTTTACTCGTTTGGACACCGGCATTCCATCTTTCAGCCAGATTATAGTTGGTGTTGGGGATGCCTGTAATCGGGAGTTCATATTGTAATAAATTCAGACTTCT

Function

GO:

id name namespace
GO:1903146 regulation of autophagy of mitochondrion biological_process
GO:0005777 peroxisome cellular_component
GO:0042579 microbody cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063089 lncRNA upstream 64125 46697914 ~ 46706578 (+) True XLOC_032313
TCONS_00063082 lncRNA upstream 341974 46427878 ~ 46428729 (+) True XLOC_032309
TCONS_00063081 lncRNA upstream 344991 46421119 ~ 46425712 (+) False XLOC_032309
TCONS_00063073 lncRNA upstream 450175 46309736 ~ 46320528 (+) True XLOC_032306
TCONS_00063070 lncRNA upstream 508581 46258820 ~ 46262122 (+) False XLOC_032305
TCONS_00064956 lncRNA downstream 87936 46937298 ~ 46975247 (+) True XLOC_032315
TCONS_00064957 lncRNA downstream 130755 46980117 ~ 46981872 (+) True XLOC_032317
TCONS_00064958 lncRNA downstream 616406 47465768 ~ 47475780 (+) False XLOC_032320
TCONS_00064959 lncRNA downstream 616444 47465806 ~ 47469478 (+) False XLOC_032320
TCONS_00064960 lncRNA downstream 616546 47465908 ~ 47469288 (+) False XLOC_032320
TCONS_00063088 mRNA upstream 47810 46697710 ~ 46722893 (+) False XLOC_032313
TCONS_00063087 mRNA upstream 83624 46668717 ~ 46687079 (+) True XLOC_032312
TCONS_00063086 mRNA upstream 276619 46481024 ~ 46494084 (+) True XLOC_032311
TCONS_00063085 mRNA upstream 315883 46431874 ~ 46454820 (+) True XLOC_032310
TCONS_00063084 mRNA upstream 330646 46431854 ~ 46440057 (+) False XLOC_032310
TCONS_00063093 mRNA downstream 574904 47424266 ~ 47462413 (+) False XLOC_032319
TCONS_00063094 mRNA downstream 575156 47424518 ~ 47424714 (+) True XLOC_032319
TCONS_00063096 mRNA downstream 994398 47843760 ~ 47856241 (+) False XLOC_032321
TCONS_00063097 mRNA downstream 997004 47846366 ~ 47865858 (+) True XLOC_032321
TCONS_00063099 mRNA downstream 1192397 48041759 ~ 48058745 (+) False XLOC_032323
TCONS_00063090 other upstream 21079 46749506 ~ 46749624 (+) True XLOC_032314
TCONS_00063069 other upstream 744740 46025846 ~ 46025963 (+) True XLOC_032304
TCONS_00063065 other upstream 837481 45932241 ~ 45933222 (+) False XLOC_032302
TCONS_00063061 other upstream 1165307 45605280 ~ 45605396 (+) True XLOC_032300
TCONS_00063059 other upstream 1415178 45355409 ~ 45355525 (+) True XLOC_032298
TCONS_00063091 other downstream 20822 46870184 ~ 46870298 (+) True XLOC_032316
TCONS_00063092 other downstream 428777 47278139 ~ 47278257 (+) True XLOC_032318
TCONS_00063095 other downstream 618548 47467910 ~ 47467992 (+) True XLOC_032320
TCONS_00063098 other downstream 1125517 47974879 ~ 47975014 (+) True XLOC_032322
TCONS_00063106 other downstream 1755461 48604823 ~ 48604937 (+) True XLOC_032329