RNA id: TCONS_00064683


Basic Information

Item Value
RNA id TCONS_00064683
length 860
lncRNA type read_through
GC content 0.37
exon number 2
gene id XLOC_032315
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46770695 ~ 46975247 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCACCATCAGCCTGTCTTAGCAGAACAAAGAATGTGATGGTTGACGTTCCACCCACAAGATGGTGTCAGAGACTGCGTAATAAGTCCTTGAAGGGAGAAAATCTCAGCGTTTTCTCAACGTTAGTTTCAAACTATAGCTGAACaaattataaatcagGCCTATGGACGAACACAGATTCACTCACAGAAACACAAGACAGGGGAGAAGACGGGGAGGTTAAACcaataaaacataattattcaATCCACCAAGGGGTTGAATGTGAGATTACAATAGACAAGACTAAAGAAAAAGCAGACAAACTGGGAGGGAAATGAGACGTGTTTCACACCGCATACATTAGCAGCAGCTTTTTCTGCGTCTTCTTTTTCTGAAACAGTTCTCACACTGCTGTCTAGCTCAAGCTGTTGGTTTCTGCACAAAGCTTTTAACCCATCAGattaaattgtgaaaatataATTGACCACTTctgttttaaaattgcatttttgaGGCAGCATACTTACACGAACTAACTCACACCCTGATTGTTAAACATgacatgcatttattaaatttgaaCTAAAAGTTAAACATTTGCATGCCAGGCAGTAGTTGGCGATGTTACTTCAGTATGGAgtgtttacatttatgcattttttacTCGAGCATGTGCTTTACGCTTATTTGGTGCTGGTCTTTTAACTGTTCTCAACGTGGATAAAATTTATGGCACCCTTAATTGTGTAATTTTCTGCCCTTTGATATCCGGATTGGACAATCCAGAGTGTTTTGAAATCGTCACTTGAAAATGACTTTTGACTTTTTTAgggtagtttttttatttaatttatttttatttttaataatgtgatttca

Function

GO:

id name namespace
GO:1903146 regulation of autophagy of mitochondrion biological_process
GO:0005777 peroxisome cellular_component
GO:0042579 microbody cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063089 lncRNA upstream 141116 46697914 ~ 46706578 (+) True XLOC_032313
TCONS_00063082 lncRNA upstream 418965 46427878 ~ 46428729 (+) True XLOC_032309
TCONS_00063081 lncRNA upstream 421982 46421119 ~ 46425712 (+) False XLOC_032309
TCONS_00063073 lncRNA upstream 527166 46309736 ~ 46320528 (+) True XLOC_032306
TCONS_00063070 lncRNA upstream 585572 46258820 ~ 46262122 (+) False XLOC_032305
TCONS_00064956 lncRNA downstream 16454 46937298 ~ 46975247 (+) True XLOC_032315
TCONS_00064957 lncRNA downstream 59273 46980117 ~ 46981872 (+) True XLOC_032317
TCONS_00064958 lncRNA downstream 544924 47465768 ~ 47475780 (+) False XLOC_032320
TCONS_00064959 lncRNA downstream 544962 47465806 ~ 47469478 (+) False XLOC_032320
TCONS_00064960 lncRNA downstream 545064 47465908 ~ 47469288 (+) False XLOC_032320
TCONS_00063088 mRNA upstream 124801 46697710 ~ 46722893 (+) False XLOC_032313
TCONS_00063087 mRNA upstream 160615 46668717 ~ 46687079 (+) True XLOC_032312
TCONS_00063086 mRNA upstream 353610 46481024 ~ 46494084 (+) True XLOC_032311
TCONS_00063085 mRNA upstream 392874 46431874 ~ 46454820 (+) True XLOC_032310
TCONS_00063084 mRNA upstream 407637 46431854 ~ 46440057 (+) False XLOC_032310
TCONS_00063093 mRNA downstream 503422 47424266 ~ 47462413 (+) False XLOC_032319
TCONS_00063094 mRNA downstream 503674 47424518 ~ 47424714 (+) True XLOC_032319
TCONS_00063096 mRNA downstream 922916 47843760 ~ 47856241 (+) False XLOC_032321
TCONS_00063097 mRNA downstream 925522 47846366 ~ 47865858 (+) True XLOC_032321
TCONS_00063099 mRNA downstream 1120915 48041759 ~ 48058745 (+) False XLOC_032323
TCONS_00063090 other upstream 98070 46749506 ~ 46749624 (+) True XLOC_032314
TCONS_00063069 other upstream 821731 46025846 ~ 46025963 (+) True XLOC_032304
TCONS_00063065 other upstream 914472 45932241 ~ 45933222 (+) False XLOC_032302
TCONS_00063061 other upstream 1242298 45605280 ~ 45605396 (+) True XLOC_032300
TCONS_00063059 other upstream 1492169 45355409 ~ 45355525 (+) True XLOC_032298
TCONS_00063092 other downstream 357295 47278139 ~ 47278257 (+) True XLOC_032318
TCONS_00063095 other downstream 547066 47467910 ~ 47467992 (+) True XLOC_032320
TCONS_00063098 other downstream 1054035 47974879 ~ 47975014 (+) True XLOC_032322
TCONS_00063106 other downstream 1683979 48604823 ~ 48604937 (+) True XLOC_032329
TCONS_00063119 other downstream 2174792 49095636 ~ 49103309 (+) False XLOC_032336

Expression Profile

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