RNA id: TCONS_00006303


Basic Information

Item Value
RNA id TCONS_00006303
length 2831
lncRNA type antisense
GC content 0.47
exon number 4
gene id XLOC_003195
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6205969 ~ 6224120 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAGGTTAAGGCGACATTACAAGCTCGTATTACACCCCTCCACatcagtatttatttatgctgGTAGGACAACGTGATGGATATGCTAACGTTACCTATCGGTTTATATTTTGATTACACACTATGCTACCTATTTTTTGAATGGAAAAATCTGACAGGATAGGACTTATCGACGGAACACTTGCcaggcataaaacaaaaacagtgtaATCATGACAGACATACAAAACTGGAATAAAACACTTGGGGAGAGGGGTAAACTCAGGCAGCACGTGTACGTGTGTCTCACCGTAGCTTTAGCTATGATGAACACGGACTCTTGACTCGCCAGAGTCACATCCGGATCTGCTTTCATCAGGGTTTTAATGCGGGACAGCGGAAGCCTGGCGAGCCGGTGTTGCTGTGCGCCCGCGGTGGGCCCGGTTTGCCCGCTCCCCGCGTCTTCCTCCGGCTCGGTGCCCCGGGGCTCTTCTTCAGCCCCGCTGCGGTCCAACTCCGATTCCGCGGGAGCTGCAGACGCGGTCGCCGCCATCGACGCACAAAAACTCTCAACCGAACGCGCTGCTGTGAACCGAAAGCAGATAATCTAATCCTCTCCCGCCAAATCTGACTGTAAACACAACCTAGAGGAGGACGGCGGAAACCACGTCACTGCACGACGTCATGCTAGCGGGTCAACTCATTTCACTGAGTAAGGTACCAAAACACTAAATATCTGGGCAAAGCGGCACGCAAAGAAAGGAAAGAATGAGGCAGCAGCACAACCCGTTCAGAAAGAGGCAGAAGCACGAAAGCCTCCGGTTCTCACACCCGAACAACGAGCAAAGCAGACAGCCTTCGAGAGGGTCCTCTATGACATGTCCCACAACGACCGGGTCATCAATGACATCATTCTGGGCCGCAGGATAGGTTTCTACGATCTCAGAGGAGAAATAGGGACTGGAAATTTCTCCCAGGTCAAACTTGCTGTTCATGAGTTGACCAAAGAGCGTGTTGCAGTCAAAATTCTTAACAAGGCACGTCTCGACAAGAAGTCGCAGAATTTATTTGCCTCAGAGATCATGTGTATGGAAAAACTCTCCCATCCAAACATCGTTCGTCTGTATGAAGTGCTTGAGACGGGTAAGCATGTGTACCTCGCTATGGAGTACGGCAGCGGAGGCGATCTGTTCTCACGCATCACCACCAGAGGACGCCTGTCAGACCTGGAGAGCAAACTCATCTTTGCCCAGATCGTCTCAGCCATTAAATACATGCATGAAATCAACATCATCCACCGTGACCTGAAAGCCGAAAATATTTTTTACACCACATGCTACTGCATCAAAGTGGGCGACTTTGGTTTTAGTGTGTTTAGTGAGCCCGGCGAAACTCTCACCACGTTTTGTGGTTCCCCTCCATATGCAGCTCCCGAGCTGTTCAGGGACAAGAGCTACATGGGCCGTTATGTGGACGTCTGGGCGCTGGGCGTCCTCCTCTACTTCATGGTAACCGCCACCATGCCTTTCTTCGCTGACAACTTAGGCCGACTGAAGCGCTGCATCCTGCAGGGGGCATACAGCATCCCGTCCTATGTCCCGGACTCCTGCCAGCTGGCCATCAAGGGGATGCTGAGACCTGTACCTGTGGACCGCAGCACACTGTCACAGCTGATGATCTGCTCCTGGATGCAGTGCATCGAATACCCCAAACCTTACCCCACATTCAGCGGGACACCCGGCTATCTGGCTGACCCTGCCAAGAGCCTGTGTGTGGAGGAGCAGGAGGTAAAGTCAGCTCTAAGCGAGCTGGGTTTAAGCGGGACACATCTGCAGAATAACACCTGCACTGACTGCCGCAGCCCGATCACAGGAGCCTACCGTATCCTGCTGCACCGCATCCAGAAGAGGAGATCCGTGGAGGCAGTGGGATATTCAGGTCTCTACCCAGAGGATTTCAGTAGCAAGAAATACTGGGCCAACAGCCCGACGGCAAAACACAATCCTTCCGCAGTGTGTAATGTCCTGTGAAGACCTTATTTTGAAACGGATTATGTGAATGAGGCCACATTACAGGAACTGGTGAATTGAAATTCATGCAATTATTTCCAGTTTAAGGGTTAGTTCAACCAAAATTTACatttctgtaattaattactcTCCATCTTGTCGTTTTCATCCAATGAGACCTTTATTtaacttcaaaacacaaattaaaatattttgaatgaaatcagagagctccatCATCCTCCGTAGATAACAATGGTTCTGATATATTCAATCAAGacaaggaaccaaaaacattccaTGCGACTTCAGTGGTTTAAATGTGATAATATGAacctttaaaaacacttttgtgtgccaaaaaactctgaaaataagtcacatggaatgttttgataatgtttttgtttcatttcctGGACTCTGATAGTCTCTTGACTGTTTCTGACTGTAGAGAGTTCtcgaatttcatctaaaatatcttaatgaaggtctcagggggttGGAATGACAAGagcgagtaattaataacagaattgtaatgttttttgCAGGAACTAACACTTTAATCCCATGTTCACCATCGAGGAATGATCACAAGATCAGTCTCTTACATTAGgtactgtttttttaatatatcaatttaaaagCTGACCTTTATCagtgttttaaatgtgatttcaAAGCAATGTCAGATGATTACAAGTCTCTTTTTATCAAATCAACAACATACAGAAAAAACAACACGTTTAGACCTGTGCAGCCAGATTCACAAAAGAAATGCAACAGTAAACATCAAAAACACATGGCCCCTGATtgcgaaaataaatgaattatgagtg

Function

GO:

id name namespace
GO:0034440 lipid oxidation biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044242 cellular lipid catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0030258 lipid modification biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159523

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006298 lncRNA upstream 64647 6136295 ~ 6141322 (+) False XLOC_003192
TCONS_00006289 lncRNA upstream 126762 6076764 ~ 6079207 (+) False XLOC_003190
TCONS_00008529 lncRNA upstream 131186 6070459 ~ 6074783 (+) False XLOC_003189
TCONS_00008530 lncRNA upstream 131186 6072085 ~ 6074783 (+) True XLOC_003189
TCONS_00006286 lncRNA upstream 132888 6070160 ~ 6073081 (+) False XLOC_003189
TCONS_00006309 lncRNA downstream 98878 6322998 ~ 6324302 (+) True XLOC_003198
TCONS_00006314 lncRNA downstream 219337 6443457 ~ 6444163 (+) True XLOC_003203
TCONS_00006316 lncRNA downstream 232028 6456148 ~ 6457303 (+) False XLOC_003204
TCONS_00006317 lncRNA downstream 232040 6456160 ~ 6457261 (+) False XLOC_003204
TCONS_00006318 lncRNA downstream 232051 6456171 ~ 6457195 (+) True XLOC_003204
TCONS_00006302 mRNA upstream 602 6169312 ~ 6205367 (+) True XLOC_003194
TCONS_00006300 mRNA upstream 30912 6152643 ~ 6175057 (+) False XLOC_003193
TCONS_00006301 mRNA upstream 31216 6159595 ~ 6174753 (+) True XLOC_003193
TCONS_00006297 mRNA upstream 60811 6136220 ~ 6145158 (+) False XLOC_003192
TCONS_00006296 mRNA upstream 71386 6116503 ~ 6134583 (+) True XLOC_003191
TCONS_00006307 mRNA downstream 57527 6281647 ~ 6293709 (+) True XLOC_003196
TCONS_00006308 mRNA downstream 71250 6295370 ~ 6316718 (+) True XLOC_003197
TCONS_00006311 mRNA downstream 150328 6374448 ~ 6378070 (+) True XLOC_003200
TCONS_00006312 mRNA downstream 198254 6422374 ~ 6423160 (+) True XLOC_003201
TCONS_00006313 mRNA downstream 207013 6431133 ~ 6434600 (+) True XLOC_003202
TCONS_00006299 other upstream 61326 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006283 other upstream 168416 6034242 ~ 6037553 (+) True XLOC_003188
TCONS_00006273 other upstream 282228 5880575 ~ 5923741 (+) False XLOC_003185
TCONS_00006262 other upstream 674393 5531443 ~ 5531576 (+) True XLOC_003178
TCONS_00006260 other upstream 724085 5481753 ~ 5481884 (+) True XLOC_003176
TCONS_00006310 other downstream 103858 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006329 other downstream 638132 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006340 other downstream 925869 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006341 other downstream 926154 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006342 other downstream 926427 7150547 ~ 7150640 (+) True XLOC_003217

Expression Profile

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