RNA id: TCONS_00008539


Basic Information

Item Value
RNA id TCONS_00008539
length 1555
lncRNA type antisense_over
GC content 0.35
exon number 5
gene id XLOC_003217
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7149071 ~ 7152007 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGGGACTATATAACCTAAGTTCGCTCATTCTTCCTTCCCACTTCCTACTCGCTTTTGAGGATGTTGACTTCGAAATCATGGAGTTTTGCCCTTGCACATTCTCAGATCTCGGTCATACTCCAACCAAACAGATGACCCCCACGTTTAAAATGGTGCAATAATAACCCCATCATACTCTGAAGCAGATCCCTCCCCAACCAAATGGATATTCCTGCATTTGAAAGGATTTGAGAACCCCATCGTACTCTGAAGCAGGTAAAGATGGATCTGTTCTTTAGACCTTTTGTGCCATTTTATCTGGTGCACGTGATGACTAACCTTTTTTCCCCAGCAGATCGACTCTGTTGACTTGTAACACGAAAAATAAGCCAAATTATCTGAGCAACCAGATGGCTGCACTAAAACTGTGGTTGTATAAATTTCAGTTTCAATTAACTTGTTACAATTCCTCTCCTCACAGATCATACTTCAATCAAATGGATGGTCCTGAATTTAGAAGGATTCAATAACCCCATTATACTCTGAAGCAGGCCAAGACCCAATTCAAGATGATCAGGGGAGTTTTACATGCCACCCAACATGTTAATGCCACACCTTCAGAGAGAAGCAGGTGGTCCAGTGTCTGGAGAAGAGAATTTGGGTGGAATGTTACAAATTCTGCTTGGTGTTGCAGATTAGTTCTATTAATAAACCCTGGaacttaagtgtgtttgtttaattatttatctattttttataaaTGGTTCATATTCAAGCTggaattttattttcaataaacaaTTGGATCTTtaacctgactttttttttttttttttttttttttttgatctacAAATTAAGTTTGTAATCAAATAGTCACATTGGACTAAATAGGTACAATTACAGTAAGTTTAATGTAATTGCACAAAGGTTTGTTAAAgtttaatcacactttttttttttttttctaccctCTTTAAGCCAACAATACCCATTATTGCCTCATACCCACATTATACTTTAGTTTGTCCTAAACTCAAAGTAAATATTTGAATACACTTAAAAGAACATAAAAACGTGCTGCTTATTTGAATAAATTACCTTTTTggattgtcaaaaaaaaaaaacagccacccTACGTCACATTACCGAaggaattattttatttcacaaatagCAAATAGTTTACGCCACCTATACAGGGGTTGTAGAAAACATTGCCCATTAGGTTCACCTTATTAATTCAGGGtagaataataatttttttttttgtgtgtgtgtgctacgtAGTGGtaatggtgaaatgaagctttctgaacttTCCAATTCAAGTGTATTGGAAAAAGATTAGTTTCTTGAAGCTTTTTAAATCCGAGCTCGATAAGGATCCATGTTGtctaaagtgtgggaaagcactgtgttgcaaaaaatgtcaaatgttcacaactgaccaactcattcatgtagtcaTACAAcggtaatataaacaaattactcaattattgtaggttttttttttttttttacatataacatGCTTTATATAACACTATTGTTGACTAGTAAAATCCAAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031428 box C/D snoRNP complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005732 small nucleolar ribonucleoprotein complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006337 lncRNA upstream 45968 7095176 ~ 7103536 (+) True XLOC_003216
TCONS_00006336 lncRNA upstream 193125 6946797 ~ 6956379 (+) True XLOC_003215
TCONS_00006335 lncRNA upstream 196124 6946591 ~ 6953380 (+) False XLOC_003215
TCONS_00008386 lncRNA upstream 333499 6808096 ~ 6816005 (+) True XLOC_003210
TCONS_00006322 lncRNA upstream 471295 6658656 ~ 6678209 (+) True XLOC_003208
TCONS_00006350 lncRNA downstream 62667 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008546 lncRNA downstream 129232 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006366 lncRNA downstream 568332 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00006367 lncRNA downstream 630507 7782514 ~ 7783314 (+) True XLOC_003227
TCONS_00008388 lncRNA downstream 673346 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00006334 mRNA upstream 191462 6902946 ~ 6958042 (+) True XLOC_003214
TCONS_00006333 mRNA upstream 214919 6902306 ~ 6934585 (+) False XLOC_003214
TCONS_00006331 mRNA upstream 253523 6882049 ~ 6895981 (+) False XLOC_003213
TCONS_00006332 mRNA upstream 258414 6882362 ~ 6891090 (+) True XLOC_003213
TCONS_00006330 mRNA upstream 259941 6881001 ~ 6889563 (+) False XLOC_003213
TCONS_00006344 mRNA downstream 6716 7158723 ~ 7179516 (+) True XLOC_003219
TCONS_00006345 mRNA downstream 31018 7183025 ~ 7212097 (+) False XLOC_003220
TCONS_00006346 mRNA downstream 31065 7183072 ~ 7194753 (+) False XLOC_003220
TCONS_00006347 mRNA downstream 31078 7183085 ~ 7194962 (+) False XLOC_003220
TCONS_00006348 mRNA downstream 31124 7183131 ~ 7211899 (+) True XLOC_003220
TCONS_00006329 other upstream 287136 6862252 ~ 6862368 (+) True XLOC_003212
TCONS_00006310 other upstream 821411 6327978 ~ 6328093 (+) True XLOC_003199
TCONS_00006305 other upstream 926205 6209170 ~ 6223299 (+) False XLOC_003195
TCONS_00006306 other upstream 926205 6209911 ~ 6223299 (+) False XLOC_003195
TCONS_00006299 other upstream 1004861 6136321 ~ 6144643 (+) True XLOC_003192
TCONS_00006353 other downstream 109997 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006384 other downstream 2746506 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 4115883 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 4119927 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 4193796 11345803 ~ 11346099 (+) True XLOC_003250

Expression Profile

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