RNA id: TCONS_00063738


Basic Information

Item Value
RNA id TCONS_00063738
length 1582
lncRNA type lincRNA
GC content 0.41
exon number 5
gene id XLOC_032755
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17281907 ~ 17285849 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgtttctccgagtccgcctgacgaccgacctgtttctccggacctgtttctccgcctgACGGCGACCTGTTTCTCCGCCTGACACCCGAGCTGTTGCTCCGCCTGACGCCCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCGCCTCACGCCCGACCTGCTGCTCCGCCTCACAGCCAGCCTGTTGATCGGTGGACGGGAAAGCGCGCATGGCATCGGAAGGAGCTTGAAAAGTATAAGatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGgGTGGCATGGGGGCGCactgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagcctcggatgggtttcccccccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTCATGTTCTCGTCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCTAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGTTTATGGACATCCTGGGGAGGAGACACTAGCAGTAAGGGTTCTGCTAGCATTAatttttgctgacaaacagtaatcattaatactgtgacctcactgcttccttggattctgtgttctttaacttgtactttggattgtgggggaaaaggagcacccggagaaaacccacacaaacacggggaaaacatgcaaactccacacagaaacaccaactgacccagctgaggcttaaaccaccgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctttgctatgatgacggcacataataatggactagatattttttaaagacacTCTACACTGCAGTTACATTACAACTAATGTTTCTTACAGACTCTTTTATATCTCAGgattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgtttaaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttGATCATCCTTACTGATGATTGCTTTATATCTCATATATTGATGTTGGCACATAATTGTTAAAGgaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcattattactttcacatatttttttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctCATGTTTGTCTTTTAGAAgcattttcattattacttcCTTATAC

Function

GO:

id name namespace
GO:0198738 cell-cell signaling by wnt biological_process
GO:1905114 cell surface receptor signaling pathway involved in cell-cell signaling biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156346

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063731 lncRNA downstream 64386 17119279 ~ 17217521 (-) True XLOC_032746
TCONS_00065121 lncRNA downstream 77066 17199644 ~ 17204841 (-) False XLOC_032751
TCONS_00065120 lncRNA downstream 124705 17156614 ~ 17157202 (-) True XLOC_032748
TCONS_00065119 lncRNA downstream 126608 17154903 ~ 17155299 (-) True XLOC_032747
TCONS_00063728 lncRNA downstream 180552 17099672 ~ 17101355 (-) True XLOC_032743
TCONS_00065122 lncRNA upstream 249111 17534960 ~ 17535475 (-) True XLOC_032760
TCONS_00065123 lncRNA upstream 381667 17667516 ~ 17668826 (-) True XLOC_032761
TCONS_00065124 lncRNA upstream 390343 17676192 ~ 17676959 (-) True XLOC_032762
TCONS_00063747 lncRNA upstream 686392 17972241 ~ 17999665 (-) False XLOC_032763
TCONS_00063748 lncRNA upstream 694191 17980040 ~ 17999751 (-) False XLOC_032763
TCONS_00063736 mRNA downstream 15686 17264905 ~ 17266221 (-) True XLOC_032753
TCONS_00063734 mRNA downstream 75879 17204785 ~ 17206028 (-) True XLOC_032751
TCONS_00063732 mRNA downstream 102270 17178321 ~ 17179637 (-) True XLOC_032749
TCONS_00063729 mRNA downstream 169756 17110835 ~ 17112151 (-) True XLOC_032744
TCONS_00063726 mRNA downstream 229791 17050800 ~ 17052116 (-) True XLOC_032741
TCONS_00063743 mRNA upstream 439939 17725788 ~ 17849786 (-) False XLOC_032763
TCONS_00063746 mRNA upstream 441681 17727530 ~ 17999776 (-) False XLOC_032763
TCONS_00063745 mRNA upstream 441681 17727530 ~ 17999776 (-) False XLOC_032763
TCONS_00063744 mRNA upstream 441681 17727530 ~ 17999776 (-) False XLOC_032763
TCONS_00063749 mRNA upstream 788672 18074521 ~ 18121075 (-) False XLOC_032765
TCONS_00063737 other downstream 13148 17268662 ~ 17268759 (-) True XLOC_032754
TCONS_00063735 other downstream 73049 17208761 ~ 17208858 (-) True XLOC_032752
TCONS_00063733 other downstream 99672 17182138 ~ 17182235 (-) True XLOC_032750
TCONS_00063730 other downstream 167152 17114658 ~ 17114755 (-) True XLOC_032745
TCONS_00063727 other downstream 227180 17054631 ~ 17054727 (-) True XLOC_032742
TCONS_00063739 other upstream 69219 17355068 ~ 17355165 (-) True XLOC_032756
TCONS_00063740 other upstream 99183 17385032 ~ 17385129 (-) True XLOC_032757
TCONS_00063741 other upstream 173452 17459301 ~ 17459398 (-) True XLOC_032758
TCONS_00063742 other upstream 229926 17515775 ~ 17515872 (-) True XLOC_032759
TCONS_00063755 other upstream 980747 18266596 ~ 18267362 (-) True XLOC_032769

Expression Profile

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