RNA id: TCONS_00065123


Basic Information

Item Value
RNA id TCONS_00065123
length 1178
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_032761
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17667516 ~ 17668826 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTGGTAAAACCAATAAATAGACTTATCCAAATTATGTCGCAGAAAACCCTCTTGCGCAGCCCTTCTCTAAACCTTCTCTGGACAAAAGCTACTTAAGTCAGATTCATGAACTTCCTGTGAAATCTTTCGTTATTATGGATTAAGTGGTGATCACTTGGGTATCTATAAGGTAGTGTTTATGGCACTTCTTTTTTTGCGGGCATACACTTGAGAGTCTGGCCAACTTTCTTCTGTCGCTCTCCCAGTAGTTGGGTAACTTTTGTTGCGTGAGGATACAGTGTTTTAATTGAGAGTGATCACATTATCCATTATCTGATAGTAGACTAGTTTTGTGAAGTTCAGGGGGGTGAATGTAGCCAGTAAGGAAGAGGAATGTTAATTTATTGATAATATTCGGGAATGAACTtcccaaaactaaaaaaaactatgcaTTTATGTATTATATGCCTACCGGGCGTAGGAACCTTATTTCGACACTTGTTTAAGTGGGACCGCAATTAGTGTTGCACGCTTTGCTCTCGGAGAGTGCGGGAGAGTTGCGTCAGCCTCAGTCGGAGTCCAGCCGCTGACGGGGAAAGACGAGTAAAAGTTTCTCCTGCAATTGTGTTTGCATTGTGTGTGTGAAAGGAGAGGAAAGCGTGGAGAGAGTTTCTTATTGAGTGTCCCACATGTGTTTCAGGTATGTTTCATgtaaaactgttttgtgtgaatCTTTTTATGATGTTTTATCATTCTAATTGttctaaaaaattaataattgactatttgaatttgaattgtgcTTTTATGTAATGGTATATTGCATAGTGAATAAGCCTAATTGTTTGAGAAcattatttgctgttttttttgagAATATAAATTTGATCTAGCACTTTGAGTATAATTGTAAAGAGCAACACCActtattttcactttattttttatttcatttaaacaaatacatgtttTTTGTGAGTATTATTGTACCGTGTTATAAAGTCAGCCTCAGTCGGAGTCCAGCCGCTGACGGGGAAAGACGTGTAAAAGTTTCTCCTGCaattgtgtttgcattgtgtgtgtgAAAGGAGAGGAAAGCGTGGAGAGAGTTTCTTATTGAGTGTCCCACATGTGTTTCAGGGACCAATAAATAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTGTGATTATTGGTT

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043951 negative regulation of cAMP-mediated signaling biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048864 stem cell development biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010522 regulation of calcium ion transport into cytosol biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1904427 positive regulation of calcium ion transmembrane transport biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065122 lncRNA downstream 132041 17534960 ~ 17535475 (-) True XLOC_032760
TCONS_00063738 lncRNA downstream 381667 17281907 ~ 17285849 (-) True XLOC_032755
TCONS_00063731 lncRNA downstream 449995 17119279 ~ 17217521 (-) True XLOC_032746
TCONS_00065124 lncRNA upstream 7366 17676192 ~ 17676959 (-) True XLOC_032762
TCONS_00063747 lncRNA upstream 303415 17972241 ~ 17999665 (-) False XLOC_032763
TCONS_00063748 lncRNA upstream 311214 17980040 ~ 17999751 (-) False XLOC_032763
TCONS_00065125 lncRNA upstream 330135 17998961 ~ 17999734 (-) True XLOC_032763
TCONS_00065126 lncRNA upstream 397768 18066594 ~ 18069294 (-) False XLOC_032764
TCONS_00063736 mRNA downstream 401295 17264905 ~ 17266221 (-) True XLOC_032753
TCONS_00063734 mRNA downstream 461488 17204785 ~ 17206028 (-) True XLOC_032751
TCONS_00063732 mRNA downstream 487879 17178321 ~ 17179637 (-) True XLOC_032749
TCONS_00063729 mRNA downstream 555365 17110835 ~ 17112151 (-) True XLOC_032744
TCONS_00063726 mRNA downstream 615400 17050800 ~ 17052116 (-) True XLOC_032741
TCONS_00063743 mRNA upstream 56962 17725788 ~ 17849786 (-) False XLOC_032763
TCONS_00063746 mRNA upstream 58704 17727530 ~ 17999776 (-) False XLOC_032763
TCONS_00063745 mRNA upstream 58704 17727530 ~ 17999776 (-) False XLOC_032763
TCONS_00063744 mRNA upstream 58704 17727530 ~ 17999776 (-) False XLOC_032763
TCONS_00063749 mRNA upstream 405695 18074521 ~ 18121075 (-) False XLOC_032765
TCONS_00063742 other downstream 151644 17515775 ~ 17515872 (-) True XLOC_032759
TCONS_00063741 other downstream 208118 17459301 ~ 17459398 (-) True XLOC_032758
TCONS_00063740 other downstream 282387 17385032 ~ 17385129 (-) True XLOC_032757
TCONS_00063739 other downstream 312351 17355068 ~ 17355165 (-) True XLOC_032756
TCONS_00063737 other downstream 398757 17268662 ~ 17268759 (-) True XLOC_032754
TCONS_00063755 other upstream 597770 18266596 ~ 18267362 (-) True XLOC_032769
TCONS_00063763 other upstream 847485 18516311 ~ 18516407 (-) True XLOC_032773
TCONS_00063764 other upstream 849144 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063772 other upstream 889003 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063790 other upstream 1469015 19137841 ~ 19138634 (-) True XLOC_032783

Expression Profile

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