RNA id: TCONS_00063743


Basic Information

Item Value
RNA id TCONS_00063743
length 4638
RNA type mRNA
GC content 0.43
exon number 24
gene id XLOC_032763
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17725788 ~ 17999776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gatgggcgtgtccgtggcggcctcgcaaactttgataattcgccacaaaacaggaagtcgttataactcaggcatgcatcatctgatctgcctcaaaattcacaggcttgataagagtcctgacctgaacacgtttacatgccgatatccagatacaggaaatgacatgatttacggactaacaaactcctcccacaaattttatcgtatcagcaccaaaattgagtggtgtcatctgaaagctgtagcgatgatatattgtgaagatctagagttttcgcagaggggtgtgtccgtggcgTCATGCCAGGCTGATCTTGTAAAAGATAATGGACACAAGTATTTCTTGTCAGTGCTGGCTGATCCGTTCATGCCAgcTGAGCATCGAACTATGGCTGTCTTCATTCTTGCTGTCATTGTTAATAACTATAACACAGGACAGGAGGCATGTCTGCAGGGTAACCTGATTGCAATCTGTCTGGAACAGCTCAATGACCCTCACCCTCTCCTGAGGCAATGGGTTGCAATATGTCTTGGACGAATTTGGCAGAACTATGATTCTGCTCGCTGGTGCGGAGTTCGAGATAGTGCACATGAAAAACTCTACAGTCTCCTGTCGGATTCTATACCAGAGGTACGATGTGCAGCTGTGTTTGCACTGGGCACATTTGTGGGGAATTCAGCTGAGAGAACAGATCATTCTACCACCATTGATCATAATGTGGCCATGATGCTTGCACAACTGATTAATGATGGCAGTCCCATTGAGCTGGTTGTTGCTCTAAGTCACTTAGTGGTCCAGTATGAGAGTAATTTTTGCACTGTGGCTCTGCAGTTCATGGAGGAAGAGAAGAATTACGCTGTGCCTTCACCTGCCAATTCCACAgAAACAGGAAACATTACTCCAAGTAGGGACAGTCCTGCCATTCCTCGTTTAAGATCAGTGAACTCCTACACAAACCTCAGAGCTGCCACCACTGCTCGAACCCTTAATAAGAGCCTTCAGAACCTCAACCTAAATGAGGAGGGTGGTCCGGCAGCATTTTCTCCAGGGAACCTGAGTACCAGTAGCAGTGCCAGCAGCACTCTGGGCAGTCCTGATAATGATGAATACCTTCTCTCCTTTGAAACCATCGACAAGATGAGAAGAGTCAGCTCATACTCATCCTTAAATTCTCTCATTGGTGCAAGCAGGCGCAAGCAGACATTGAAGCCAGAGCAGACCTGGCGTCAATGCCGTGATGACATCTGGGCGCGGCCAATAGGAGAGAAGCTGTTTTTAGGTTGGACGGAGTTCCCGATGCAGAGCAGTAAGCCCCTGCTGAgaGTGTCTTTTAACAGTGTTTATACTCAGATTTGGAGGGTATTACTACATCTTGCAGCTGATCCATTTCCAGATGTCTCTGATCTGGCCATGAAGGTTCTCAACAGCATTGCATACAAGGCCACCATGAATGCTCGCACACAAAGAATTTTGGACTCAGGATCTCTGACCCAGTCAGCTCCAGCCAGCCCCACCAGTAAAGGCACACTAATTCATCAAGCTGGTGCTTCCCACAGATCCAAATGCTCTTCATCTCCCTCCAGCGGATCTCCACCCATGCCTGGTGCATCCAGCTCCAGTCTCACCAATGAAGTGCCCAAGCCACCGGTCCGGGACGGTCCATCTGCTCGGCCACCATACACTCCAACACTAGGTGGTCAGGCACCCCACTCACAGCAGTTTCCACGCACCAGGAAGATGTTTGATAAGGGCCCTGATCAGACTGCTGAGGATGGAGATGAGACTGCTGTTCACAGGAGCTTCGTCAGTTTGAGTCTGCAGACAGGTCTTTGTGACTGGAGTGCCAAATACTTTGCTCAGCCTGTCATGAAGATTCCAGAAGAGCATGATTCGGAGAGTCAGGTTCGTAAGGATAGGGAGTGGAGATTCTTACGTAATGCTCGAGTACGCAAACAAAGCCAACGCATCACTCAAAGAGGAGTGACAAGGTTAGATGACCAGATCTTCATCAACAGAAACCCAGGAGTGCCATCAGTGGTAAATTTTTGGGACTGGGAAAAAGGAGAGAGGTTGGATTATTTTTATAATGGCAACCCACGGTACACGCGCATCACAGCCATGGAGTACCTTAATGGGCATGACTGCTCTCTTCTCCTCACTGCCACAGCATTGCGAATTTGGAAGAACTTTGCTGACCAGAGAAATCCAGAGATGGTCACAGCATGGCAAGGCTTGTCTGACATGCTGCCCACCACACGagGTATGGTGGTGGACTGGGAGCAGGAGACTGGCCTCTTGATGACGTCTGGTGATGTTCGAGTCATACGGATCTGGGACACAGAAAGAGAAATAAAAGTTCAGGACATCCCAACAGGAGCAGACAGTTGTGTAACCAGCCTGTCATGTGATCCTCAGCGGTCATTAGTAGCCGCAGGCCTTGGAGATGGATCTGTTCGAGTGTATGATCGAAGAATGGGACCTAATGAGTGTCGTGTGATGACTTACAGGGAACATGGAGCTTGGGTGGTTAAGGCACACTTGCAGAAAGAGCCGGAAGGACACATTATCAGTGTCAGTGTAAATGGAGATGTGCGGTTCTTTGACCCACGGATGCCAGAATCAGTCAACACCTTGCAAACAGTGAAAGGACTGACAGCCCTAGACATCCATCCACAGGCAAATTTGTTTGCTTGTGGCTCTATGAATCAGTTTATAGCTGTGCATAACTCTAATGGGGATGTGATCAGCAACATTAAATACTATGATGGTTTTATGGGGCAGAGAATTGGAGCCATCAGCTGCCTGGCCTTTCACCCTTTCTGGCCTCATCTTGCAGTGGGCAGTAATGATTACTACATGTCCATCTACTCAGCGGAGAAGAGACTCAGATGACCTCCAACCACTGACCCCTCCTGACCCATTTTGGATGTAAATGATTTCCTGTACATATGCAACAACCACAATGAATGTCTTAAGAAGGCTGCTGAACCAACACATGATGACTATATTATTATCCTTGTTATTATTATCAAGATAATTATCATTAAGGATTTATTGTTTGTAGACGTGGAGCAGTGTGTATTAATTAAATTgcatataaaaatctaaaaacaacaacaacatcaacaaaaaactTTGGCTTATGCTGGCTGATGATTTTCACTGTCATGGAACTTCATGCAGAGCCTGCAGTAAGAAAGACAAGAGACTGAAAGATTATAAACTTCCAGGTGTTCCAAGCAGCCAGGAGAACGCCTGTGACTTAAACTTTTTGAGTCTGTCGGAAGCCTTGTGCCTCATATCTCTTCTAAAACTCTGTCAGTGTTGCTGTTGATCTATAGTTTAATTGAGCACTCTTACTATTCAGTCATAACCTTCCTTAAACATCCCTGCTTCTGTACACACACAGTGCCAAACCATCTCCCCACACATGCATGTACACAAAAGCTGCATTACACCTCAACAACACAAAATTCAGTTTTCAAAGCACTGAACACAGACAACAATCATACATTTGCATCCACACTGTGTAGTGAGGAGCATGTGAACAATGCTAGGTTTTGTAAGCTCAAATAATCAACAAGAaggtatataaatatttcaaaacagaAAAGTAAAGATAAGAAGTGAGTTTGCCATGCATTTTTGGTACCAGGGCTGTGCAAAAGCCTTAAACTATAAgtttagtctctctctctctctctctctctctctttctctctctcgctctctctctcgctctctctctctctctcactctctctctctctctctctttctctttctctttctctctgtcttctCCTTATGTGGAATGCGATACAACTATCATGTCTCTTTCATAATATTATCATAGCAATTTCatgaaaatatgatttttttctgtttttgttaccTTTACTTAAGTAATTCTACATTTGTACTTCTACAAGTTTTAAGATGTTAAATCCATGTCACACAACAGTTTACATATAAATAATACTTAGTGTTTACTGTAAGCctaaatatatagttaaaaactaaaactaaagctATAGTTATAGGTTTCATTGTGAGGTGACAGACCTGGATCAAATACTTAGAAAGACTCGACTTATATATCGTTTCCTTTTGGATAATCTTGTCACAGTTGAATTATATTTCTTTCAAATAATTCCATTCATGGTTTACACTCAAATAATagataaactaattaaattttaaaggtTACTTCTTGTTGGATGTGAAGTTAATACATCCTTCAAAACATCGGATGATGAATGGCAGATATGTTTATTTCTTGAAGTgtgcttttatttgttattttgttatgtatgtaatatatgtatttatttattttttttcttttaactggattaatttttttgtttgtttgtttttcgtgTTCCAATTTCTTTTCTCaatcttttttttaacttgtatttcatAACCTGTTTCTTTTTTCTACAATGTTCTGTCAAAACTCTAAATTAGAAATAACAGTTGTTTTTTCACTATTCCTTGTGACTAAATCTGCAGTTGGATTCTCTCCCCTTTAGGACATTATTTTTCATCAAAATGTGGTTTAGAACATATTGGTTTTATTCATGAGTTTTGTCAGTATATTGCCAATAAAGTTGATTTTTAGCCACTTG

Function

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:0031929 TOR signaling biological_process
GO:0010506 regulation of autophagy biological_process
GO:0038202 TORC1 signaling biological_process
GO:0030307 positive regulation of cell growth biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0031931 TORC1 complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-685 Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in several processes, including TORC1 signaling; cellular response to amino acid stimulus; and positive regulation of protein serine/threonine kinase activity. Predicted to be part of TORC1 complex. Predicted to be active in cytoplasm. Is expressed in head; notochord; post-vent region; pronephros; and spinal cord. Orthologous to human RPTOR (regulatory associated protein of MTOR complex 1).

Ensembl:

ensembl_id ENSDART00000172709

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065124 lncRNA downstream 48829 17676192 ~ 17676959 (-) True XLOC_032762
TCONS_00065123 lncRNA downstream 56962 17667516 ~ 17668826 (-) True XLOC_032761
TCONS_00065122 lncRNA downstream 190313 17534960 ~ 17535475 (-) True XLOC_032760
TCONS_00063738 lncRNA downstream 439939 17281907 ~ 17285849 (-) True XLOC_032755
TCONS_00063731 lncRNA downstream 508267 17119279 ~ 17217521 (-) True XLOC_032746
TCONS_00063747 lncRNA upstream 122455 17972241 ~ 17999665 (-) False XLOC_032763
TCONS_00063748 lncRNA upstream 130254 17980040 ~ 17999751 (-) False XLOC_032763
TCONS_00065125 lncRNA upstream 149175 17998961 ~ 17999734 (-) True XLOC_032763
TCONS_00065126 lncRNA upstream 216808 18066594 ~ 18069294 (-) False XLOC_032764
TCONS_00065127 lncRNA upstream 216808 18066594 ~ 18069521 (-) False XLOC_032764
TCONS_00063736 mRNA downstream 459567 17264905 ~ 17266221 (-) True XLOC_032753
TCONS_00063734 mRNA downstream 519760 17204785 ~ 17206028 (-) True XLOC_032751
TCONS_00063732 mRNA downstream 546151 17178321 ~ 17179637 (-) True XLOC_032749
TCONS_00063729 mRNA downstream 613637 17110835 ~ 17112151 (-) True XLOC_032744
TCONS_00063726 mRNA downstream 673672 17050800 ~ 17052116 (-) True XLOC_032741
TCONS_00063749 mRNA upstream 224735 18074521 ~ 18121075 (-) False XLOC_032765
TCONS_00063750 mRNA upstream 261852 18111638 ~ 18128721 (-) True XLOC_032765
TCONS_00063751 mRNA upstream 347175 18196961 ~ 18199062 (-) True XLOC_032766
TCONS_00063752 mRNA upstream 353678 18203464 ~ 18228358 (-) True XLOC_032767
TCONS_00063753 mRNA upstream 394434 18244220 ~ 18249760 (-) False XLOC_032768
TCONS_00063742 other downstream 209916 17515775 ~ 17515872 (-) True XLOC_032759
TCONS_00063741 other downstream 266390 17459301 ~ 17459398 (-) True XLOC_032758
TCONS_00063740 other downstream 340659 17385032 ~ 17385129 (-) True XLOC_032757
TCONS_00063739 other downstream 370623 17355068 ~ 17355165 (-) True XLOC_032756
TCONS_00063737 other downstream 457029 17268662 ~ 17268759 (-) True XLOC_032754
TCONS_00063755 other upstream 416810 18266596 ~ 18267362 (-) True XLOC_032769
TCONS_00063763 other upstream 666525 18516311 ~ 18516407 (-) True XLOC_032773
TCONS_00063764 other upstream 668184 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063772 other upstream 708043 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063790 other upstream 1288055 19137841 ~ 19138634 (-) True XLOC_032783

Expression Profile

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