RNA id: TCONS_00063745


Basic Information

Item Value
RNA id TCONS_00063745
length 4441
RNA type mRNA
GC content 0.48
exon number 35
gene id XLOC_032763
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17725788 ~ 17999776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACAATTGTACGTCACTAGCACGGTGCATTCTGGGTTTACTCCAAAATGGCTGCGCCCTTGCGCAAGTGTTAAAAAAACACTTATCTCGCCTGAAAGTCAAATTAACATCTTAGGTTTCACTGTGTTGATCATCATCGAGGACGACAGACAGTGCACACAAATAAATCAGTGGATTAAGGTATTTCGTGCCTGCCCTGATTCAAGCAGATTGCATTTTAAGGGACATGACGATGGGCCGCTTCGCCTAACCCACATCAAAACGCAGACCAGCGCAGATACCCCTGTCACCCTGCGCCTGCAGGCCCTGTACAGACTGATTTGTGTAATCACCCGCAGAGGCAACGGATCTACAGCTCGAGCTTTGGAGGACTGTTTATTTTGGAGattttttttttaatgaaaatggaTGCTGAGCTGCTTCACTCCCCTGTCTTGGGTCTggcagaggaggaggaggtggacaTGACTGACTGGAACCTTCCACTGGCCTTCATGAAGAAACGCCACACAGAGAAGATTGAGGGATATAAAGCTTTGGCTCAGAGCTGGAGAATGAAAGACAggATGAAAACAGTGAGTGTGGCTCTAGTTTTATGTCTGAATGTTGGTGTGGACCCTCCTGATGTAGTGAAGACCTCACCCTGTGCCAGACTGGAGTGCTGGATAGACCCTCTATCCATGAGTCCACAGAAAGCGCTGGAAACAATAGGAGCTAACCTCCAGAAACAGTATGAGAACTGGCAGCCCAGGGCCCGGTATAAGCAGAGTTTGGACCCTACAGTTGATGAAGTAAAGAAGTTGTGTACTTCACTACGCAGAAATGCCAAGGAGGAACGTGTTCTCTTTCACTATAATGGTCATGGGGTGCCTCGACCTACTGTTAATGGAGAGATCTGGGTTTTCAACAAGaACTATACCCAGTACATCCCACTCTCTGTCTATGACCTACAGACATGGATGGGAAGTCCCTCCATCTTTGTGTATGACTGTTCTAATGCAGGCATCATCGTAAAGTCATTCAAACAGTTTGCATTGCAGAGGGAGCAGGAGCTGGAGGTGGCAGCAATAAACCCAAACCACCCACTAGCTCAGATGCCTCTGCCTCCCTCGATGAAAAACTGCATTCAGCTGGCTGCCTGTGATGCCAGTGAACTCCTACCCATGAATCCTGACCTCCCTGCTGACCTCTTCACTTCTTGTCTCACCACACCAATCAAAATTGCTCTACGCTGgTTTTGTATGCAGAAGAGTGCAAAGCTGGTGCCAGGAGTGACGTTAGACCTGATTGAGAAGATACCAGGAAGGCTGAATGACAGGAGGACACCTTTAGGAGAGCTGAACTGGATTTTCACAGCTATCACTGACACAATTGCATGGAATGTCCTACCGAGAGATCTCTTTCAGAAATTATTTCGTCAGGATCTCTTGGTGGCCAGTTTATTTCGCAATTTCCTATTGGCTGAGAGAATTATGAGGTCATATAACTGTACACCAGTCAGCAGCCCCAGGTTGCCACCCACATACATGCATGCTATGTGGCAAGCATGGGACCTGGCGGTGGACATTTGCCTTTCCCAGCTGCCCACCATCATTGAGGAAGGCACTGCTTTCAGGCACAGTCCATTCTTTGCTGAACAACTGACAGCCTTTCAGGTGTGGCTGTCAATGGGTGTGGAGAACAGAAACCCACCAGAGCAGCTGCCTATCGTCCTGCAGGTCCTTTTAAGTCAGGTACACAGGCTGAGGGCGCTGGATTTGCTTGGACGATTTTTGGACCTGGGTCCTTGGGCTGTCAGTTTGgcTCTTTCAGTAGGAATTTTTCCATATGTGCTAAAACTGTTGCAGAGTTCAGCGAGAGAGCTGAGGCCTCTTTTGGTCTTCATCTGGGCAAAGATCCTGGCTGTAGATAGTTCATGCCAGGCTGATCTTGTAAAAGATAATGGACACAAGTATTTCTTGTCAGTGCTGGCTGATCCGTTCATGCCAgcTGAGCATCGAACTATGGCTGTCTTCATTCTTGCTGTCATTGTTAATAACTATAACACAGGACAGGAGGCATGTCTGCAGGGTAACCTGATTGCAATCTGTCTGGAACAGCTCAATGACCCTCACCCTCTCCTGAGGCAATGGGTTGCAATATGTCTTGGACGAATTTGGCAGAACTATGATTCTGCTCGCTGGTGCGGAGTTCGAGATAGTGCACATGAAAAACTCTACAGTCTCCTGTCGGATTCTATACCAGAGGTACGATGTGCAGCTGTGTTTGCACTGGGCACATTTGTGGGGAATTCAGCTGAGAGAACAGATCATTCTACCACCATTGATCATAATGTGGCCATGATGCTTGCACAACTGATTAATGATGGCAGTCCCATTGTGAGGAagGAGCTGGTTGTTGCTCTAAGTCACTTAGTGGTCCAGTATGAGAGTAATTTTTGCACTGTGGCTCTGCAGTTCATGGAGGAAGAGAAGAATTACGCTGTGCCTTCACCTGCCAATTCCACAgAAACAGGAAACATTACTCCAAGTAGGGACAGTCCTGCCATTCCTCGTTTAAGATCAGTGAACTCCTACACAAACCTCAGAGCTGCCACCACTGCTCGAACCCTTAATAAGAGCCTTCAGAACCTCAACCTAAATGAGGAGGGTGGTCCGGCAGCATTTTCTCCAGGGAACCTGAGTACCAGTAGCAGTGCCAGCAGCACTCTGGGCAGTCCTGATAATGATGAATACCTTCTCTCCTTTGAAACCATCGACAAGATGAGAAGAGTCAGCTCATACTCATCCTTAAATTCTCTCATTGgaGTGTCTTTTAACAGTGTTTATACTCAGATTTGGAGGGTATTACTACATCTTGCAGCTGATCCATTTCCAGATGTCTCTGATCTGGCCATGAAGGTTCTCAACAGCATTGCATACAAGGCCACCATGAATGCTCGCACACAAAGAATTTTGGACTCAGGATCTCTGACCCAGTCAGCTCCAGCCAGCCCCACCAGTAAAGGCACACTAATTCATCAAGCTGGTGCTTCCCACAGATCCAAATGCTCTTCATCTCCCTCCAGCGGATCTCCACCCATGCCTGGTGCATCCAGCTCCAGTCTCACCAATGAAGTGCCCAAGCCACCGGTCCGGGACGGTCCATCTGCTCGGCCACCATACACTCCAACACTAGGTGGTCAGGCACCCCACTCACAGCAGTTTCCACGCACCAGGAAGATGTTTGATAAGGGCCCTGATCAGACTGCTGAGGATGGAGATGAGACTGCTGTTCACAGGAGCTTCGTCAGTTTGAGTCTGCAGACAGGTCTTTGTGACTGGAGTGCCAAATACTTTGCTCAGCCTGTCATGAAGATTCCAGAAGAGCATGATTCGGAGAGTCAGGTTCGTAAGGATAGGGAGTGGAGATTCTTACGTAATGCTCGAGTACGCAAACAAAGCCAACGCATCACTCAAAGAGGAGTGACAAGGTTAGATGACCAGATCTTCATCAACAGAAACCCAGGAGTGCCATCAGTGGTAAAGTTTCATCCATTTAACCCCTGCATTGCTGTAGCTGACAAAGACTCAATTTGTTTTTGGGACTGGGAAAAAGGAGAGAGGTTGGATTATTTTTATAATGGCAACCCACGGTACACGCGCATCACAGCCATGGAGTACCTTAATGGGCATGACTGCTCTCTTCTCCTCACTGCCACAGATGATGGAGCATTGCGAATTTGGAAGAACTTTGCTGACCAGAGAAATCCAGAGATGGTCACAGCATGGCAAGGCTTGTCTGACATGCTGCCCACCACACGagGTGCAGGTATGGTGGTGGACTGGGAGCAGGAGACTGGCCTCTTGATGACGTCTGGTGATGTTCGAGTCATACGGATCTGGGACACAGAAAGAGAAATAAAAGTTCAGGACATCCCAACAGGAGCAGACAGTTGTGTAACCAGCCTGTCATGTGATCCTCAGCGGTCATTAGTAGCCGCAGGCCTTGGAGATGGATCTGTTCGAGTGTATGATCGAAGAATGGGACCTAATGAGTGTCGTGTGATGACTTACAGGGAACATGGAGCTTGGGTGGTTAAGGCACACTTGCAGAAAGAGCCGGAAGGACACATTATCAGTGTCAGTGTAAATGGAGATGTGCGGTTCTTTGACCCACGGATGCCAGAATCAGTCAACACCTTGCAAACAGTGAAAGGACTGACAGCCCTAGACATCCATCCACAGGCAAATTTGTTTGCTTGTGGCTCTATGAATCAGTTTATAGCTGTGCATAACTCTAATGGGGATGTGATCAGCAACATTAAATACTATGATGGTTTTATGGGGCAGAGAATTGGAGCCATCAGCTGCCTGGCCTTTCACCCTTTCTGGCCTCATCTTGCAGTGGGCAGTAATGATTACTACATGTCCATCTACTCAGCGGAGAAGAGACTCAGATGA

Function

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:0031929 TOR signaling biological_process
GO:0010506 regulation of autophagy biological_process
GO:0038202 TORC1 signaling biological_process
GO:0030307 positive regulation of cell growth biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0031931 TORC1 complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-685 Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in several processes, including TORC1 signaling; cellular response to amino acid stimulus; and positive regulation of protein serine/threonine kinase activity. Predicted to be part of TORC1 complex. Predicted to be active in cytoplasm. Is expressed in head; notochord; post-vent region; pronephros; and spinal cord. Orthologous to human RPTOR (regulatory associated protein of MTOR complex 1).

Ensembl:

ensembl_id ENSDART00000181577

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065124 lncRNA downstream 50571 17676192 ~ 17676959 (-) True XLOC_032762
TCONS_00065123 lncRNA downstream 58704 17667516 ~ 17668826 (-) True XLOC_032761
TCONS_00065122 lncRNA downstream 192055 17534960 ~ 17535475 (-) True XLOC_032760
TCONS_00063738 lncRNA downstream 441681 17281907 ~ 17285849 (-) True XLOC_032755
TCONS_00065121 lncRNA downstream 522689 17199644 ~ 17204841 (-) False XLOC_032751
TCONS_00065126 lncRNA upstream 66818 18066594 ~ 18069294 (-) False XLOC_032764
TCONS_00065127 lncRNA upstream 66818 18066594 ~ 18069521 (-) False XLOC_032764
TCONS_00065128 lncRNA upstream 66818 18066594 ~ 18069564 (-) True XLOC_032764
TCONS_00065129 lncRNA upstream 290060 18289836 ~ 18322664 (-) False XLOC_032770
TCONS_00063756 lncRNA upstream 291026 18290802 ~ 18292046 (-) True XLOC_032770
TCONS_00063736 mRNA downstream 461309 17264905 ~ 17266221 (-) True XLOC_032753
TCONS_00063734 mRNA downstream 521502 17204785 ~ 17206028 (-) True XLOC_032751
TCONS_00063732 mRNA downstream 547893 17178321 ~ 17179637 (-) True XLOC_032749
TCONS_00063729 mRNA downstream 615379 17110835 ~ 17112151 (-) True XLOC_032744
TCONS_00063726 mRNA downstream 675414 17050800 ~ 17052116 (-) True XLOC_032741
TCONS_00063749 mRNA upstream 74745 18074521 ~ 18121075 (-) False XLOC_032765
TCONS_00063750 mRNA upstream 111862 18111638 ~ 18128721 (-) True XLOC_032765
TCONS_00063751 mRNA upstream 197185 18196961 ~ 18199062 (-) True XLOC_032766
TCONS_00063752 mRNA upstream 203688 18203464 ~ 18228358 (-) True XLOC_032767
TCONS_00063753 mRNA upstream 244444 18244220 ~ 18249760 (-) False XLOC_032768
TCONS_00063742 other downstream 211658 17515775 ~ 17515872 (-) True XLOC_032759
TCONS_00063741 other downstream 268132 17459301 ~ 17459398 (-) True XLOC_032758
TCONS_00063740 other downstream 342401 17385032 ~ 17385129 (-) True XLOC_032757
TCONS_00063739 other downstream 372365 17355068 ~ 17355165 (-) True XLOC_032756
TCONS_00063737 other downstream 458771 17268662 ~ 17268759 (-) True XLOC_032754
TCONS_00063755 other upstream 266820 18266596 ~ 18267362 (-) True XLOC_032769
TCONS_00063763 other upstream 516535 18516311 ~ 18516407 (-) True XLOC_032773
TCONS_00063764 other upstream 518194 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063772 other upstream 558053 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063790 other upstream 1138065 19137841 ~ 19138634 (-) True XLOC_032783

Expression Profile

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