RNA id: TCONS_00065125


Basic Information

Item Value
RNA id TCONS_00065125
length 774
lncRNA type sense_over
GC content 0.43
exon number 1
gene id XLOC_032763
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17725788 ~ 17999776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAATGGCTGCGCCCTTGCGCAAGTGTTAAAAAAACACTTATCTCGCCTGAAAGTCAAATTAACATCTTAGGTTTCACTGTGTTGATCATCATCGAGGACGACAGACAGTGCACACAAATAAATCAGTGGATTAAGGTATTTCGTGCCTGCCCTGATTCAAGCAGATTGCATTTTAAGGGACATGACGATGGGCCGCTTCGCCTAACCCACATCAAAACGCAGACCAGCGCAGATACCCCTGTCACCCTGCGCCTGCAGGCCCTGTACAGACTGATTTGTGTAATCACCCGCAGAGGCAACGGATCTACAGCTCGAGCTTTGGAGGACTGTTTATTTTGGAGGTAGCGTTACTCGTACAATTTACAAAACCCCTCAGCATTTCGACATTGTGCAAAATACCAAAACTTGTTCTTTGACACTGTGGTCTCGGTCCCCTAAATGTaagttatagtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtagttgTAACGTCAGTTTCTGTGTacgtatagtatagtatagtattgtCTAGTCTAGTCTATGTCTTTCTATCTATTACGTGTGTGTGTCACAGGTGCATACCATtactttaggtcacaatttactgtaaaagCAAACCATTAACCAACATTACTAGCTtgataaactactaattagctgtttgttAATAGTTAAGGTAGAAGTTAGGTTTAGGTTTTGTGTAGGATTAGGA

Function

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:0031929 TOR signaling biological_process
GO:0010506 regulation of autophagy biological_process
GO:0038202 TORC1 signaling biological_process
GO:0030307 positive regulation of cell growth biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0031931 TORC1 complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065124 lncRNA downstream 322002 17676192 ~ 17676959 (-) True XLOC_032762
TCONS_00065123 lncRNA downstream 330135 17667516 ~ 17668826 (-) True XLOC_032761
TCONS_00065122 lncRNA downstream 463486 17534960 ~ 17535475 (-) True XLOC_032760
TCONS_00063738 lncRNA downstream 713112 17281907 ~ 17285849 (-) True XLOC_032755
TCONS_00065121 lncRNA downstream 794120 17199644 ~ 17204841 (-) False XLOC_032751
TCONS_00065126 lncRNA upstream 66860 18066594 ~ 18069294 (-) False XLOC_032764
TCONS_00065127 lncRNA upstream 66860 18066594 ~ 18069521 (-) False XLOC_032764
TCONS_00065128 lncRNA upstream 66860 18066594 ~ 18069564 (-) True XLOC_032764
TCONS_00065129 lncRNA upstream 290102 18289836 ~ 18322664 (-) False XLOC_032770
TCONS_00063756 lncRNA upstream 291068 18290802 ~ 18292046 (-) True XLOC_032770
TCONS_00063743 mRNA downstream 149175 17725788 ~ 17849786 (-) False XLOC_032763
TCONS_00063736 mRNA downstream 732740 17264905 ~ 17266221 (-) True XLOC_032753
TCONS_00063734 mRNA downstream 792933 17204785 ~ 17206028 (-) True XLOC_032751
TCONS_00063732 mRNA downstream 819324 17178321 ~ 17179637 (-) True XLOC_032749
TCONS_00063729 mRNA downstream 886810 17110835 ~ 17112151 (-) True XLOC_032744
TCONS_00063749 mRNA upstream 74787 18074521 ~ 18121075 (-) False XLOC_032765
TCONS_00063750 mRNA upstream 111904 18111638 ~ 18128721 (-) True XLOC_032765
TCONS_00063751 mRNA upstream 197227 18196961 ~ 18199062 (-) True XLOC_032766
TCONS_00063752 mRNA upstream 203730 18203464 ~ 18228358 (-) True XLOC_032767
TCONS_00063753 mRNA upstream 244486 18244220 ~ 18249760 (-) False XLOC_032768
TCONS_00063742 other downstream 483089 17515775 ~ 17515872 (-) True XLOC_032759
TCONS_00063741 other downstream 539563 17459301 ~ 17459398 (-) True XLOC_032758
TCONS_00063740 other downstream 613832 17385032 ~ 17385129 (-) True XLOC_032757
TCONS_00063739 other downstream 643796 17355068 ~ 17355165 (-) True XLOC_032756
TCONS_00063737 other downstream 730202 17268662 ~ 17268759 (-) True XLOC_032754
TCONS_00063755 other upstream 266862 18266596 ~ 18267362 (-) True XLOC_032769
TCONS_00063763 other upstream 516577 18516311 ~ 18516407 (-) True XLOC_032773
TCONS_00063764 other upstream 518236 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063772 other upstream 558095 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063790 other upstream 1138107 19137841 ~ 19138634 (-) True XLOC_032783

Expression Profile

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