RNA id: TCONS_00006367


Basic Information

Item Value
RNA id TCONS_00006367
length 538
lncRNA type antisense
GC content 0.49
exon number 2
gene id XLOC_003227
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7782514 ~ 7783314 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tccacagaatgccacaaaGGACAcgatcgaatgccttctccaagtccacaaaacacttGAAAGTGTGTACTAgaagggtgtacctaataaagtggccgAAAACTCGAAAGAGCACCAGATTCCCAGCCGTATCCGTTTGGCAATGAGAAACAGTGAATCTAAAACAGCAAATGTTCTCTGCCTCTCAGGATATCAGAATCTAGCAGCCCTTGATCTCGACTGTGGCAGCGTGTGGATTGATGTGGGTAATGTAGTCAAGGCCAGCTGTTAGCAAGAGGAGACGCACTTGTGTCAAACACACTGACCCCCATTTCCAGCCTAATAATGCAGATCCATCCAGCTTCAGCCTGGCCCTGCGCTTGCATATGGAAAAGGTGTCAAACGCTCAGCGGAAAGCCAGTCTGTCCCCGAGGGCTCTGTCGCATGAACTGTGTGTCACCTACATGTCTACCCCTCAAGTGTGATAACAGATCTGTGTATGATCTCGGAATACTGCCGACTCTTTAGCCCTGTAATGATGGCTGTATGACATTTGCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154884

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006366 lncRNA upstream 60188 7720339 ~ 7722326 (+) True XLOC_003226
TCONS_00008546 lncRNA upstream 496204 7281239 ~ 7286310 (+) True XLOC_003224
TCONS_00006350 lncRNA upstream 563154 7214674 ~ 7219360 (+) True XLOC_003221
TCONS_00008543 lncRNA upstream 630507 7149669 ~ 7152007 (+) False XLOC_003217
TCONS_00008388 lncRNA downstream 42039 7825353 ~ 7826072 (+) True XLOC_003228
TCONS_00008547 lncRNA downstream 96828 7880142 ~ 7954546 (+) False XLOC_003229
TCONS_00006368 lncRNA downstream 96863 7880177 ~ 7971030 (+) False XLOC_003229
TCONS_00008548 lncRNA downstream 123693 7907007 ~ 7954546 (+) True XLOC_003229
TCONS_00006379 lncRNA downstream 794740 8578054 ~ 8580557 (+) True XLOC_003234
TCONS_00006361 mRNA upstream 44872 7432533 ~ 7737642 (+) False XLOC_003226
TCONS_00006364 mRNA upstream 44872 7580079 ~ 7737642 (+) False XLOC_003226
TCONS_00006363 mRNA upstream 44872 7580079 ~ 7737642 (+) False XLOC_003226
TCONS_00006365 mRNA upstream 44872 7580155 ~ 7737642 (+) False XLOC_003226
TCONS_00006362 mRNA upstream 45581 7528599 ~ 7736933 (+) False XLOC_003226
TCONS_00006369 mRNA downstream 346222 8129536 ~ 8149796 (+) False XLOC_003230
TCONS_00006370 mRNA downstream 346366 8129680 ~ 8150894 (+) True XLOC_003230
TCONS_00006371 mRNA downstream 369558 8152872 ~ 8157495 (+) False XLOC_003231
TCONS_00006372 mRNA downstream 369568 8152882 ~ 8157035 (+) False XLOC_003231
TCONS_00006373 mRNA downstream 369654 8152968 ~ 8161149 (+) True XLOC_003231
TCONS_00006353 other upstream 508136 7262004 ~ 7274378 (+) False XLOC_003222
TCONS_00006343 other upstream 631608 7150820 ~ 7150906 (+) True XLOC_003218
TCONS_00006342 other upstream 631874 7150547 ~ 7150640 (+) True XLOC_003217
TCONS_00006341 other upstream 632148 7150274 ~ 7150366 (+) False XLOC_003217
TCONS_00006340 other upstream 632432 7149989 ~ 7150082 (+) False XLOC_003217
TCONS_00006384 other downstream 2115199 9898513 ~ 9898630 (+) True XLOC_003238
TCONS_00006409 other downstream 3484576 11267890 ~ 11274557 (+) False XLOC_003248
TCONS_00006412 other downstream 3488620 11271934 ~ 11274600 (+) False XLOC_003248
TCONS_00006417 other downstream 3562489 11345803 ~ 11346099 (+) True XLOC_003250
TCONS_00006423 other downstream 3589572 11372886 ~ 11373182 (+) True XLOC_003255