RNA id: TCONS_00063775


Basic Information

Item Value
RNA id TCONS_00063775
length 2931
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_032779
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 18623492 ~ 18698669 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGTGGATTTCCAGTGTCAGACTTCAATGAAATATGGAAGCGAAGAGGAACTTAGTTTGGGATAAACTCATTTACAATAAGATGTGACAGAGCTGGAAAAATGCGTAGGTTTACATGACGTTCTGAGTTTTCAAAACCAAATGTGGAAATATGTAAGGGATTTATGAGAACAAAACATCATGGCAGAACTTTATGAAAGGAGATAATCATTATTTAGATGGACTGAAAGAGGCAGAAGGAATATGGTAAACTCATCTCCAGCAGTTGCTGCTCATGCAGAGGGAGAAGAGATCGAGGTGCTGGAGAGCACTGATGTCCTTCCTGTAGCTCCAGAGGACCAATGGAAGTGTCTTTTTGACAAGTATGACCCAGAGAATTCAGGCTTCATCAGTACTGAGCGTTTCCGAGATCTGCTTGCAGCTCATGGATCAGAACTGGACCCTCACAAGCTTGAAGTTCTTCTTGCCCTTGCTGATGCAAATGCAGACGGAAAGATTTGCTACCAGGATTTTGTTAACCTGGTGAGTTCTGCAGATGAACTAAAGATGAGTAACAAGCGTTCAAACAGTTTTCGTCAAGCAATCCTGCAGGGGAGTCGACAGCTCAGGAATTCTGCTTTGAGAGAGGAAGTGGGCTTGGGTCTGTCTCGGAGACTTGTGCGCCACGTTGCCTATGAGACTTTGCCCAGAGAAGTGGACCGCAAATGGTACTTTGACAGTTACACCTACTGTCCACCACCATGGCTTATGCTGGCCATCACTATAACAGAGGTTGTTGTCTTTATGTATTATGGACTGCAGCTGAATCGCTGGGTTCTGCAGGTATCATCGCCATACTTCCTGAAGGGCCCATTGCCATACCACCCGCAGCTTAGAGCGCAAGCCTGGCGCTTCCTTAGCTACATCTTCATGCATGCTGGAATTGAACACCTGGGTCTAAACATGGCCATGCAGCTTTTGGTGGGTGTGCCACTTGAGATGGTCCATGGAGCTTTGAGAATCggcctagtgtatgtgtgtggcgCCCTGGCAGGCTCTTTGGCTGTTTCTGTGACGGATATGACAGCACCTGTGGTTGGTTCATCAGGAGGAGTCTATGCACTGGTTTCTGCTCACCTCGCCAATGTTGTCATGAACTGGTCAGGGATGAAGTGTCAGTTCAAGCTCTTTCGCATGGCAATGGCTCTGGTGTGCATGAGTGTGGAGTTTGGCCGTGCTGTCTGGCTTCGGTGCTATCCCCCAGCCTTCCCACCATGTCCTAATCCCAGCTTTGTGGCCCATCTGGGGGGTGTGGCAGTGGGCCTCACCCTTGGCGTTGTGGTTCTTCAAAACTATGAACAGCGTTTGCAAGAACAGTCCCTGTTCTGGATCTTCTTCAGTGTCTACACACTCTTTATCCTCTGTGGAATCTTCTGGAACATTTTTGCTTACAATCTCTTGGATGTCAAGTTACCCCCGCCTCCTTGAAGCACAGAGTTTGTGTGTCTCAAATGACTAACAAAATAATCTAGCTGTTGTAAAGGTCATAAATGACTAAACAAATGTTAAGTACCTTACTGCAGTCCTCCTGCAATGTTCGTGTTAGTGCCTAAACCATGCCAAGTTCTAGCATCGTCGAAGCGGTTCAAAAGAGCAGATTGAGATTTCTACGCAGTGATGAGTGTAAATTTGCTGGACAGGCTGAAAAGCGCTTTTGACATCTTCATACTTTGAGGGCTTTCAGCAATAGcacaaatattattttcaaaataaaactgcTGCAGGCTTGTCAACTGAGTATCattaataaatatcagtattttatGAGAACATTTGAATAAGTGttctatatttttataaaagataAAGACATGAGGTAGTATGAAAGCACTGATGCagtctgttgtgtgtgtgagaagaATCCTTAAAAGATATTTAAGAATAACCAAAGTAGCAAGGaaacaaatgaacagcaaataatTAGTATTACAAATGTTTCAGTGTATCACTCTAGCTGGAATGCTTTTTAATGAATCCGATATTATCCAAGGAGACTAACTCCCCCTCCTCTTCAAAGTTGAATCACTACTGTCATCCTTGCAGGAAGGGAGTTTGTGGCACCAGAATACAAATCTTAGTCCTAAAATTGATTtactaaattatatatttgaatCATGTATTATAGTAAGAACAATGTGACTTGCAAAAGTGacaaaaaatcattttgaaagtCATTTTGAGAGGTATATATGACACAAAATGCTAAATTGGTATTGTTATAAGCTGTCTAATATATACATGCTTGTATTACTGTAGTTTTGGAATTGTGATTGTGTACCTCAAATTAACATCTACTATACCTCGAATACTGTAAATGGTCAGTGTTTTTCTGTTGGTGCTGTAATATTTTTGGAGGTTTTCTGAGTGTCTGTTCCTCTAGTAACTGGTTTGCACCTTTAAGTTCTGCCAGTGATTACAGACACTGATCCTGGTACAGCTTTGTGTTTACTGTGAGTATCTTCTGCCTGTATGTGGCACCACTGACTCAGACTAACATGAACAGAGGAAACCCAAAATAAAATCCTCTGCTTCTGAAAATTAGTAAATGCAGTACTTTAATGCCAGTTTTGTGTCCTGAACAACAGGAAAAGCTTTCACAATGTGTATAAGCTACTttgccatttatttattgttttattttgttttgttgctttttcTATCAAAATGTAATGAAACATGGAACTTGAAAAGGGCAGTGACACTGGAAATGCGAATGCGTATTTCAGCATGCACATATTTTGCAGATTTGAGATGTAAATATGGAAAACATTATTGGAAATGACACTttcactgatttcttttatttcaaattgtgaaagaagtttttaaacctgaaacatttgaaaaaaatgtatattgttatTTCAATAAAATGCTTTAGAAATAGCAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-2 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including basal plate midbrain region; hatching gland; midbrain neural keel; nervous system; and presumptive diencephalon. Orthologous to human RHBDL3 (rhomboid like 3).

Ensembl:

ensembl_id ENSDART00000170128

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063771 lncRNA downstream 63292 18557421 ~ 18560200 (-) False XLOC_032776
TCONS_00063769 lncRNA downstream 92242 18530367 ~ 18531250 (-) True XLOC_032775
TCONS_00063766 lncRNA downstream 92563 18529386 ~ 18530929 (-) False XLOC_032775
TCONS_00063760 lncRNA downstream 233322 18389169 ~ 18390170 (-) False XLOC_032772
TCONS_00063756 lncRNA downstream 331446 18290802 ~ 18292046 (-) True XLOC_032770
TCONS_00064724 lncRNA upstream 741094 19439100 ~ 19440159 (-) True XLOC_032793
TCONS_00063812 lncRNA upstream 973673 19671679 ~ 19672339 (-) True XLOC_032795
TCONS_00065130 lncRNA upstream 1503322 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00063818 lncRNA upstream 1504003 20202009 ~ 20288898 (-) False XLOC_032800
TCONS_00063819 lncRNA upstream 1504003 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00063774 mRNA downstream 5386 18605644 ~ 18618106 (-) True XLOC_032778
TCONS_00063773 mRNA downstream 22188 18594977 ~ 18601304 (-) True XLOC_032777
TCONS_00063770 mRNA downstream 63302 18554819 ~ 18560190 (-) False XLOC_032776
TCONS_00063768 mRNA downstream 91732 18530083 ~ 18531760 (-) False XLOC_032775
TCONS_00063765 mRNA downstream 92106 18524444 ~ 18531386 (-) False XLOC_032775
TCONS_00063779 mRNA upstream 16207 18714213 ~ 18739519 (-) False XLOC_032780
TCONS_00063780 mRNA upstream 20661 18718667 ~ 18751696 (-) True XLOC_032780
TCONS_00063781 mRNA upstream 237809 18935815 ~ 18971063 (-) False XLOC_032781
TCONS_00063782 mRNA upstream 237809 18935815 ~ 18992896 (-) False XLOC_032781
TCONS_00063783 mRNA upstream 237867 18935873 ~ 18976168 (-) False XLOC_032781
TCONS_00063772 other downstream 63357 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063764 other downstream 105425 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063763 other downstream 107085 18516311 ~ 18516407 (-) True XLOC_032773
TCONS_00063755 other downstream 356130 18266596 ~ 18267362 (-) True XLOC_032769
TCONS_00063742 other downstream 1107620 17515775 ~ 17515872 (-) True XLOC_032759
TCONS_00063790 other upstream 439835 19137841 ~ 19138634 (-) True XLOC_032783
TCONS_00063791 other upstream 448418 19146424 ~ 19147218 (-) True XLOC_032784
TCONS_00063797 other upstream 568211 19266217 ~ 19271143 (-) True XLOC_032786
TCONS_00063808 other upstream 694854 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063813 other upstream 1018417 19716423 ~ 19716541 (-) True XLOC_032796

Expression Profile

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