RNA id: TCONS_00063785


Basic Information

Item Value
RNA id TCONS_00063785
length 2201
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_032781
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 18935815 ~ 19035749 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAAGCTAAAGGGGAAGTCTGCAAATAAAGGGAGAGGAGGAGAAACACTAGAAACCACATGTGGCTGTTAGGAGCCATAACCTAGCTATGGAGCGAGACAGAATAGCTGCTCTAAAACGCTCATTTGAAGTGGAGGATGTGGATTCTTCATCACATTCTTCCTCACCTCACACACGCCGAGCACCGTCTAATGTTCAGCGTTCAGCCATGTCCCCTACCAGTGGACGGTATTATGAATTAGGTTCCAATGGTACCAAGCCTTCTGACACCTCGAGGCCCAAAGCTCGAACTCCCGAACCTGTGCCACGTAGGACAGAGCTGTGCTTTGACATTGCATCCAACAACAACGGAAAAGCTATTGAAGGCTCTCCAAGTCCAGGCACATCTCGGTTTGGGCTGAAGAGGCCAGATGTCTTGGGCCACAGTAAGACACCTGAAACCCAGAAGCACTCAGTGACCTTCAGCAAGACACTAGAGACTATTGCTCCCATCACACGTGCAGCATCTACCATTGTTCCCCATGCCAGTTCTAAACTCCCAGAGACCACCTTTAGGAAGAGTGAGCCACCAAGCCCTGGGGATGGATCAGCAAGAAAACCTGAAATTACTATCTCCAAAACATCAGACGCCAGAAGTCATGAGAGTCTTCACCATCCACCAGTTACAACCAGGTGCCCATCACCTAATCACGTTGGACGGAAATCTCCTGGATCTGATGGCCATAgaCCCGAGGTTATTACAAGTTTTTACGGAAATATGGCGGACGTAGGAAAGACACCTGTGGCACGGAACGAAAAGACCAGCAGTGAATTTGGCTATGTGGGCATTGATGCTATCTTGGAACAGATGAGGAGGAAAGCCATGAAACAAGGCTTTGAGCTCAACATAATGGTAGTGGgtcAGAGTGGTCTGGGTAAATCCACATTGATGAACACACTTTTTAAATCTAAAGTGAGTCGTAGATCCGTTATGACAACAGAGGAAGAGAGAATTCCTAAGACCATTGAAATCAAGTCAATTAGTCATGATATTGAAGAAAAAGGAGTGAGAATGAAGCTGACCGTCATTGACACACCAGGGTTCGGAGACCAAATAAACAATGAGAACTGCTGGCAGCCCATCATGAAGTTCATTAATACACAATACGAACAGTATTTACAGGAAGAGATCAACATTGACAGGAAGAAGAGAATTCCAGACTCACGAGTCCACTGCTGCATATACTTTATTCCTCCTACCGGACACTGTTTGCGACCAATTGACATTGAATTTATGAGACACCTCAGTAAGGTGGTAAACATTGTTCCTGTCATCGCCAAGGCAGATACTCTTACCCTGGAGGAGAGAGACTTCTTCAAACAGAAgATAAGAGAAGACTTGCGAGCCAATGAAATTGACATCTATCCTCAAAAGGAGTTTGATGAGGATGCAGAGGACAGAATGATTAATGAGAAGATCAGGGAGATGATCCCATTTGCTGTGGTGGGAAGTGATCAAGAATATCAGGTCAACGGAAAAAGACTTCTGGGCAGGAAAACAAGATGGGGAACAGTAGAAGttgaGAACACCACACATTGCGAGTTTGCTTACTTGCGGGACCTTCTCATCAGGACTCACATGCAGAATATTAAAGATATTACAAGCAGCATCCATTACGAGATGTACCGCGTTCGCAGACTCAATGAGAATAACACCAAACCAAATGGACAACCAGCAATCCACACCAATGGTGTACCTGAGCATGAAGTTCTCTCCCATGAGATGTAAATGTCTCTAACTATATTTCAATACATcagtccgtccatctatctatttctCTTCCTCAGTTCACTGTACTTTTTTCCATCTGCCCGTTTGTAATCTTTGACTGTTCTTTTATAACATCAAAAATTTCTGAGGATTTTTTTCTTTAGGTGTGTAGCAAAATGTAATGTTCTGTGATGAGAGTtttattatagtgtttttatgGTAATTGTTAAGTGAGCTGGAGCAATGGCTTGTCAAGTTTAACATGCCATGATACTCAGCGTTGGATCGATCacccaaaaaaattattattattattattttatctgttaaacacaaaacaaaatgttatgAAATGTActgtttgttgttgttctttcctattgtgaaagtcagtggttacaggtttccaagatattcaaaataaaaaatctaaatccaGGGTGAGTAAAA

Function

GO:

id name namespace
GO:0034613 cellular protein localization biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process
GO:0032153 cell division site cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0031105 septin complex cellular_component
GO:0005940 septin ring cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-17 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization and cytoskeleton-dependent cytokinesis. Predicted to be part of septin complex. Predicted to be active in cell division site; microtubule cytoskeleton; and septin ring. Human ortholog(s) of this gene implicated in brachial plexus neuritis. Orthologous to human SEPTIN9 (septin 9).

Ensembl:

ensembl_id ENSDART00000184729

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063771 lncRNA downstream 377186 18557421 ~ 18560200 (-) False XLOC_032776
TCONS_00063769 lncRNA downstream 406136 18530367 ~ 18531250 (-) True XLOC_032775
TCONS_00063766 lncRNA downstream 406457 18529386 ~ 18530929 (-) False XLOC_032775
TCONS_00063760 lncRNA downstream 547216 18389169 ~ 18390170 (-) False XLOC_032772
TCONS_00063756 lncRNA downstream 645340 18290802 ~ 18292046 (-) True XLOC_032770
TCONS_00064724 lncRNA upstream 415632 19439100 ~ 19440159 (-) True XLOC_032793
TCONS_00063812 lncRNA upstream 648211 19671679 ~ 19672339 (-) True XLOC_032795
TCONS_00065130 lncRNA upstream 1177860 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00063818 lncRNA upstream 1178541 20202009 ~ 20288898 (-) False XLOC_032800
TCONS_00063819 lncRNA upstream 1178541 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00063780 mRNA downstream 185690 18718667 ~ 18751696 (-) True XLOC_032780
TCONS_00063779 mRNA downstream 197867 18714213 ~ 18739519 (-) False XLOC_032780
TCONS_00063778 mRNA downstream 238717 18624955 ~ 18698669 (-) False XLOC_032779
TCONS_00063777 mRNA downstream 238717 18624955 ~ 18698669 (-) True XLOC_032779
TCONS_00063776 mRNA downstream 238930 18624646 ~ 18698456 (-) False XLOC_032779
TCONS_00063789 mRNA upstream 17039 19040507 ~ 19042294 (-) True XLOC_032782
TCONS_00063792 mRNA upstream 140455 19163923 ~ 19168640 (-) True XLOC_032785
TCONS_00063794 mRNA upstream 239965 19263433 ~ 19270484 (-) False XLOC_032786
TCONS_00063793 mRNA upstream 239965 19263433 ~ 19270484 (-) False XLOC_032786
TCONS_00063796 mRNA upstream 240088 19263556 ~ 19271210 (-) False XLOC_032786
TCONS_00063772 other downstream 377251 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063764 other downstream 419319 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063763 other downstream 420979 18516311 ~ 18516407 (-) True XLOC_032773
TCONS_00063755 other downstream 670024 18266596 ~ 18267362 (-) True XLOC_032769
TCONS_00063742 other downstream 1421514 17515775 ~ 17515872 (-) True XLOC_032759
TCONS_00063790 other upstream 114373 19137841 ~ 19138634 (-) True XLOC_032783
TCONS_00063791 other upstream 122956 19146424 ~ 19147218 (-) True XLOC_032784
TCONS_00063797 other upstream 242749 19266217 ~ 19271143 (-) True XLOC_032786
TCONS_00063808 other upstream 369392 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063813 other upstream 692955 19716423 ~ 19716541 (-) True XLOC_032796

Expression Profile

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