RNA id: TCONS_00063797


Basic Information

Item Value
RNA id TCONS_00063797
length 754
RNA type processed_transcript
GC content 0.38
exon number 3
gene id XLOC_032786
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19263433 ~ 19271210 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCTCGTCGTTCTGTTCATTTGAAGAGCATTTACACAAGTAAACATGCCTTCAGTGATAAGGCAATTTACTGCGCTTTCTCTCCTaatccttgctgtgaggccagaTGGAGaattgtTGGATCTGAAATGCCAACCCACAGTTGGAATTGTGGCGCAGACAACAGACATCAGATGTCAATACAAAGACAATGGGGATACCAATATAGTTGGAGTTTTCTTAAAGAAATCAACAGAGGAAAATTCCATTTTTCAAATGTATGGAAATAAGATATATGGGGATAAACGATTTACTCTTGAAAACCCAAGAAACGGTCCATCCTTGAAAATCACCGACACAATGTTTTCTGATGAGGGTAATTATGATTACCGTGTTGTAACAGACCGAGGTGAACAAACGATACGGCTTTCCATTACTGTCACAGGtgagatttaattatttttatcttttatcttCTATATCACCTGATTATTCTTACATGACAAAACCTGACTTAAGTTCTTAGCATGTTTAGTAGTTTTACATAGTTTTACATAATTACATACATTCTCATACTTTCTCTgccatttatctttttttaaaagccaaCTACAGTGCTCCCGTCACCAGCACATGGCCTGAAACTCTAATAAATGGAGGACCCGCTGACCTTTACTGTAATGCTACTGAAGGCTACCCAGCAGGCTACATCCACTGGTTTGACAAAACTGGAACTAACTGGACCATTAACTCAGTCCTGAGAAAAGTTCCAAA

Function

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-87 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000165429

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063771 lncRNA downstream 706017 18557421 ~ 18560200 (-) False XLOC_032776
TCONS_00063769 lncRNA downstream 734967 18530367 ~ 18531250 (-) True XLOC_032775
TCONS_00063766 lncRNA downstream 735288 18529386 ~ 18530929 (-) False XLOC_032775
TCONS_00063760 lncRNA downstream 876047 18389169 ~ 18390170 (-) False XLOC_032772
TCONS_00063756 lncRNA downstream 974171 18290802 ~ 18292046 (-) True XLOC_032770
TCONS_00064724 lncRNA upstream 167957 19439100 ~ 19440159 (-) True XLOC_032793
TCONS_00063812 lncRNA upstream 400536 19671679 ~ 19672339 (-) True XLOC_032795
TCONS_00065130 lncRNA upstream 930185 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00063818 lncRNA upstream 930866 20202009 ~ 20288898 (-) False XLOC_032800
TCONS_00063819 lncRNA upstream 930866 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00063792 mRNA downstream 97577 19163923 ~ 19168640 (-) True XLOC_032785
TCONS_00063789 mRNA downstream 223923 19040507 ~ 19042294 (-) True XLOC_032782
TCONS_00063786 mRNA downstream 230468 18937386 ~ 19035749 (-) False XLOC_032781
TCONS_00063785 mRNA downstream 242749 18937386 ~ 19023468 (-) False XLOC_032781
TCONS_00063798 mRNA upstream 23709 19294852 ~ 19305589 (-) True XLOC_032787
TCONS_00063799 mRNA upstream 35049 19306192 ~ 19313925 (-) False XLOC_032788
TCONS_00063800 mRNA upstream 36663 19307806 ~ 19310660 (-) True XLOC_032788
TCONS_00063801 mRNA upstream 44572 19315715 ~ 19333947 (-) True XLOC_032789
TCONS_00063802 mRNA upstream 63222 19334365 ~ 19340889 (-) False XLOC_032790
TCONS_00063791 other downstream 118999 19146424 ~ 19147218 (-) True XLOC_032784
TCONS_00063790 other downstream 127583 19137841 ~ 19138634 (-) True XLOC_032783
TCONS_00063772 other downstream 706082 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063764 other downstream 748150 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063763 other downstream 749810 18516311 ~ 18516407 (-) True XLOC_032773
TCONS_00063808 other upstream 121717 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063813 other upstream 445280 19716423 ~ 19716541 (-) True XLOC_032796
TCONS_00063816 other upstream 864916 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063817 other upstream 907293 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063821 other upstream 1028408 20299551 ~ 20299648 (-) True XLOC_032803

Expression Profile

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