RNA id: TCONS_00063799


Basic Information

Item Value
RNA id TCONS_00063799
length 2311
RNA type mRNA
GC content 0.37
exon number 4
gene id XLOC_032788
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19306192 ~ 19313925 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTATGAACAAagttataaattaaaacaaacagttcaaaatattttttaataaatgaaaaacgtgaataattacaaacatacacacgcaTGCTAAATacaaacatgcataaataaataaacgcttAGCCGTTTCATGTATGTTTTGTGAGCATCAACTAAGTGCGTTCCAaagagaagcttttttttttttttttgccccgtttacactagtgcgttttagttacACTCAGTTATTCATTCGAAACATATGTCACTCCTGAGGCCAAACTTTTCGAAGAGATTAGGGCACTTAGATGGGACCTTCTGATGAATGAAACGCAGCGACAGATTTACCTTTACGTCGTCATATCCGGCAGCAATACGATCGCGTCATTAGCGGCATATTAAAGTTATAGCGGCATACTAAAGTCATGGCAGACGAAAAGACGAAGGATGGTGTGAAATCAGAGAAAAGCCACATAAATCTGAGAGTATCTAGCCAGGATGGCTCAGTGGTTCAGTTCAAAATCAAGAAGCACGCACCCCTCAGTAAACTGATGAAAGTATATTGTGACAGGCAGGGGTTAACAAGGAAGCTGATTCGCTTCATGTTTGATGGCGAGTCAATTAAAGAGACTGACACACCAGCTCTGTTGGAAATGGAGGATGAGGATGCCATCGAAGTATTTCAGGAACAGCTAGCTGGCCTGATTTAACAAACTACCTCTGACATTATTAACAGtccactttgttttgttttgttttgtttttgtttttcattttgtgtgtgtgtttgtgtttgtttaacaAAGTGTTCAATACACTGGCCTCACTCCAAACAACCAAATCCTTCCTTACTGAGAAATCAATCTTCTCACACATCTGATAAATTACatcattttttaatctatttgacTAAACAGTGATATTTTATCAGATGTGTGTTCTGAGAAAAAAGCCTTTTGATTGGTAGAcagatttatctatttattttgttatttttgaggCCAAAATGTTcttccattttttttaataagcacTGTTTTGTTTACTTTGAGCCTTTGGGCTTTTATataaatttcttctttttttactcAAGACAAGACAATTATGTTCTGTAACTTGTTGTGAATTGAATCGTTAATTAAGGTTTTACGTTGGAATAAATCAGTTTTACAGAATTAGGTCATTCTTATACGTTTTGTTcttgtattttaaattttttttaagttaaagcaGACATTACATTACTGCTCATGCCACAgttatatcaccctgcagcccaagaccagttgcttcctgaagttaagcagggctgagcctgatcagtacctggatgggagaccacatgggaaaactaggttgctgttggaattggtattagtgaggccagcagtgggtcttcaacctgcggtctgtgtgagtcttaatgcctcagtaaagtgaaggggacactatactggtagtgagtgctgtcttttgtataagacattaaaccgaggtctagactctctttggtcattagaaatcccatggcacttctcgtaaagagtaggggtgtaaccccagtgtcctggccaaatttccttcatcagcccttacccatcatggtcTTCCAATCCTCCACATCAACAAAATTGGCTctgtcactgtctctccactccaccaatagctagtgttTGGTGAGTGCTGGcatcattgtcctgtggctgccgtcacatcatctaagtggatgctgcacactggcactggtgtggagagaccccctctcatgattgAGAAGAGCTTTGGGTGAATGGCCAtgtctatataaatacacattacattatatttttaggcacagctgcaatattttttcttatactCGTTCGCAAAAACATTTGAAAGCAAATTGCTCACATGCAGTTTTTCTTCACATTGTgtctacttttttttctttttttttttttttttttggctgttaaCCATGAATCCCTTGTTTGACTTAAGAAGTTAAACAGCTCACTGGCATCCAGAATATTCTCCAGATCCTCATTTTGCACATTATTTGCTTTTCtagtttctttttatttgtctgtctctctatctacAGTATTtaaacacacagatacacacatttaCGTGTATCGTCTTATATATGATTGAAAAATTAGAAACTCAAAGCATGATCTCTGtattttggcaaaataagcgTAATATAGAactctttgcctttcataaaagccaaATACCAATGATACCTAATgagcaactagaagtcaagttatttatttaactgctGTTTCACCTTAAATTTACTGTCACCTTTCAGAATTCACTTTAGAATTTTC

Function

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0005634 nucleus cellular_component
GO:0044389 ubiquitin-like protein ligase binding molecular_function
GO:0031386 protein tag molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-155 Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Predicted to be involved in protein sumoylation. Predicted to be active in nucleus. Orthologous to human SUMO2 (small ubiquitin like modifier 2).

Ensembl:

ensembl_id ENSDART00000160311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063771 lncRNA downstream 745992 18557421 ~ 18560200 (-) False XLOC_032776
TCONS_00063769 lncRNA downstream 774942 18530367 ~ 18531250 (-) True XLOC_032775
TCONS_00063766 lncRNA downstream 775263 18529386 ~ 18530929 (-) False XLOC_032775
TCONS_00063760 lncRNA downstream 916022 18389169 ~ 18390170 (-) False XLOC_032772
TCONS_00063756 lncRNA downstream 1014146 18290802 ~ 18292046 (-) True XLOC_032770
TCONS_00064724 lncRNA upstream 125175 19439100 ~ 19440159 (-) True XLOC_032793
TCONS_00063812 lncRNA upstream 357754 19671679 ~ 19672339 (-) True XLOC_032795
TCONS_00065130 lncRNA upstream 887403 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00063818 lncRNA upstream 888084 20202009 ~ 20288898 (-) False XLOC_032800
TCONS_00063819 lncRNA upstream 888084 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00063798 mRNA downstream 603 19294852 ~ 19305589 (-) True XLOC_032787
TCONS_00063796 mRNA downstream 34982 19263556 ~ 19271210 (-) False XLOC_032786
TCONS_00063795 mRNA downstream 34982 19263556 ~ 19271210 (-) False XLOC_032786
TCONS_00063794 mRNA downstream 35708 19263433 ~ 19270484 (-) False XLOC_032786
TCONS_00063793 mRNA downstream 35708 19263433 ~ 19270484 (-) False XLOC_032786
TCONS_00063801 mRNA upstream 1790 19315715 ~ 19333947 (-) True XLOC_032789
TCONS_00063802 mRNA upstream 20440 19334365 ~ 19340889 (-) False XLOC_032790
TCONS_00063803 mRNA upstream 20574 19334499 ~ 19341186 (-) False XLOC_032790
TCONS_00063804 mRNA upstream 21029 19334954 ~ 19341184 (-) True XLOC_032790
TCONS_00063805 mRNA upstream 30824 19344749 ~ 19381993 (-) False XLOC_032791
TCONS_00063797 other downstream 35049 19266217 ~ 19271143 (-) True XLOC_032786
TCONS_00063791 other downstream 158974 19146424 ~ 19147218 (-) True XLOC_032784
TCONS_00063790 other downstream 167558 19137841 ~ 19138634 (-) True XLOC_032783
TCONS_00063772 other downstream 746057 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063764 other downstream 788125 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063808 other upstream 78935 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063813 other upstream 402498 19716423 ~ 19716541 (-) True XLOC_032796
TCONS_00063816 other upstream 822134 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063817 other upstream 864511 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063821 other upstream 985626 20299551 ~ 20299648 (-) True XLOC_032803

Expression Profile

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