RNA id: TCONS_00063802


Basic Information

Item Value
RNA id TCONS_00063802
length 1324
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_032790
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19334365 ~ 19341186 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGGATTCAGCATGGACTGCTCTTGATATGGAAACTCAGACTATGCTTAAAACAGCGATTAAAGATCCCAAGACAGTAGATTTGGAGAAGCTGTCTAATGCTGTCGTAGAACATTCTTTGAAAGACCTGTCATTCTGTAAAGATGCTGGCCGCATGTGTTATGCTGTTGTTCAGgCAGAGGCTCAGAAAACTGCATCCAGTGTGTTCAGGCGAAATCTGTTGAACCGTTTACAGCAGGAGTTCATTGCAAGAGAAGAGACAAGAAAACGCTCAATGCAGGAGTGGGTGTGTGTGGTCACATTTATCTGCAGCATTTTTGATTATATCAAGGTGAACAATTCTCCCATTGCAGCCCTTGTGGATCCAGTGTATGACTGCCTCTTTGGATTGGCTCAGCCTGATTCTTTGATGAATGAGGAAGAGGTGGACTGCCTGGTTGTACAGCTACATCGTGTTGGCGAACAGCTGGAGCAAACAAATTCCGAGCGCATGAATCAGCTGTTTTACTTGCTGCGAGATGGTTTTCTCCTTCAGGAAGACCTCAGCTCAATGACAAGACTCTTGCTCTTAGAGATCCTGGAGTTCAGGGCCAGTGGCTGGACTCTCAGTGAGACCGCTCACAAGTATTACTACAGTGAAGTAGCTGACTGAGGAGAGAATGTGCTTTcttgttaaagttttaaaatgttcaGTGTTCTCAGAATGTCTGAAGAGTACTTCATGGGATCCCATGTAGGGGTACTGTAACAGTACGGCAGAGCTCGTTCATGCATATGCATGTGTTGTGTTCAGCGTTTCAGTTTAGCTCAGAATGTTTAGGTCTTTTGAGGACAATGTGTTGAGTCTGCACTGGATGAAGTTTTGATGCAATAAGAAAAGCAATCACTACCAGCCGTAAAACTGTCACCAGCAGTATTCTTGATTTgtggattacatttttaattgtcaAATTGTTCTTAGTGGTTTGACACCGTGTACGTTTTGTATGTACACATTCAACATTTTATAGCACAGGATTACTGCAACCTTAATAGGAGCTTCTCTAGTCTTAATCTGGGTTAATACTTTGTTTCttaatttatacaatttttatatTGTTCAAGTTGCTGTGTGAGACAATATGGTTGAAAACATGTTCATGTAAGTTGTGCTaagttattttgaataaaaaaaaaaattgaaaatgaaacattttcattgtGTTTATAAGCTTGTGTGtgcctttttatttaatatattaatcttTCTCAAAAGTTGTTCTAATAGCAGTTTCAGAAATgatatgtttgataatattattCAATTGATTGGAAAGAAATAAAT

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008494 translation activator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1382 Predicted to enable translation activator activity. Predicted to be involved in regulation of translational initiation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human MIF4GD (MIF4G domain containing).

Ensembl:

ensembl_id ENSDART00000181407

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063771 lncRNA downstream 774165 18557421 ~ 18560200 (-) False XLOC_032776
TCONS_00063769 lncRNA downstream 803115 18530367 ~ 18531250 (-) True XLOC_032775
TCONS_00063766 lncRNA downstream 803436 18529386 ~ 18530929 (-) False XLOC_032775
TCONS_00063760 lncRNA downstream 944195 18389169 ~ 18390170 (-) False XLOC_032772
TCONS_00063756 lncRNA downstream 1042319 18290802 ~ 18292046 (-) True XLOC_032770
TCONS_00064724 lncRNA upstream 98211 19439100 ~ 19440159 (-) True XLOC_032793
TCONS_00063812 lncRNA upstream 330790 19671679 ~ 19672339 (-) True XLOC_032795
TCONS_00065130 lncRNA upstream 860439 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00063818 lncRNA upstream 861120 20202009 ~ 20288898 (-) False XLOC_032800
TCONS_00063819 lncRNA upstream 861120 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00063801 mRNA downstream 418 19315715 ~ 19333947 (-) True XLOC_032789
TCONS_00063799 mRNA downstream 20440 19306192 ~ 19313925 (-) False XLOC_032788
TCONS_00063800 mRNA downstream 23705 19307806 ~ 19310660 (-) True XLOC_032788
TCONS_00063798 mRNA downstream 28776 19294852 ~ 19305589 (-) True XLOC_032787
TCONS_00063796 mRNA downstream 63155 19263556 ~ 19271210 (-) False XLOC_032786
TCONS_00063805 mRNA upstream 3860 19344749 ~ 19381993 (-) False XLOC_032791
TCONS_00063806 mRNA upstream 3890 19344779 ~ 19351495 (-) False XLOC_032791
TCONS_00063807 mRNA upstream 4145 19345034 ~ 19378982 (-) True XLOC_032791
TCONS_00063809 mRNA upstream 140505 19481394 ~ 19664848 (-) False XLOC_032794
TCONS_00063810 mRNA upstream 140505 19481394 ~ 19665114 (-) True XLOC_032794
TCONS_00063797 other downstream 63222 19266217 ~ 19271143 (-) True XLOC_032786
TCONS_00063791 other downstream 187147 19146424 ~ 19147218 (-) True XLOC_032784
TCONS_00063790 other downstream 195731 19137841 ~ 19138634 (-) True XLOC_032783
TCONS_00063772 other downstream 774230 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063764 other downstream 816298 18517970 ~ 18518067 (-) True XLOC_032774
TCONS_00063808 other upstream 51971 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063813 other upstream 375534 19716423 ~ 19716541 (-) True XLOC_032796
TCONS_00063816 other upstream 795170 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063817 other upstream 837547 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063821 other upstream 958662 20299551 ~ 20299648 (-) True XLOC_032803

Expression Profile

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