RNA id: TCONS_00063809


Basic Information

Item Value
RNA id TCONS_00063809
length 3369
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_032794
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19481394 ~ 19665114 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATTCGCTGAGGGAAACCAGGAAACAAACAATCAAAGCTAAATCGGCGAAGCGCAAGAACAAAACGCACAAGTCCCAAAAGCTGTTCCGAAGGAAATCGTTAAAATCGCTGGGAAATTTTATGAGCAGGATTGTCAAAACTTTGGGCACTTTGGCACACTTGGGGGACGCGGATCAGCCGGACGCAGCAGCGGAGGATGATGATGGTGGATTTGGAGACACGGCGAGTGTCCACAACTCTGGGAACTACAGAGAGAGCTCGGCGAGGAAAAGCTCTTCTTACGGGTCTGTGAAAGAAAGACTGTCCTGGTGTTACGGAGAGAAAACACCGGGAGTTCAGGGTCTGAAGAATCACGGAAACACCTGTTTTATGAACGCTGTGGTGCAGTGTCTGAGTAACACAGAACTTCTGGCTGAATATCTGGGTCTGGAGCagtataaatatgaattaaatgagCGGAGGATCAACGGGATGATGAAGAGTGAGGAGGTCAGAGGGGAAGTCACGGACAAGCTGGCATCGTTAGTAAGGGCGCTCTGGACAAACGACTACACGCCTCAGCTGTCGGTGGATTTTAAGAGTGTTGTGGCCAAGTATGGCTCTCAGTTCAAAGGAAACGCTCAACATGATGCTTTAGAGTTTCTGCTCTGGCTTCTGGATTGTGTGCATGAGGACGCTAACCTCTCCACCAACAACAACCAAAGCAGAAATAGTTCATCCAGCAAGCCCGGAACTCGACACAGTTTTGTACAGGAGCACTTCCAAGCCCAGTACAGGTCATCCTTGACATGCCCGCATTGCCTTAAACAGAGCAACACTTTTGACCCTTTCCTGTGTATTTCCCTTCCAATCCCGCTGCGACAGACCAGGGCCCTGAATGTGACTCTGGTGTTCAGCACAGAAGGTCAGCGGTTTCTGAGAATAGGGCTGGCTGTGCCTCTCTTTGGGTCTATTTCAACACTCAGGGCCATGGTAGCAGAGGAGGGCAAGCTCTCTCCAGACCAGgTAATTTTGACAGAGATGAACTCGGGTGGGTTCCAGCGCTCTTTCTCTGATGAAGATGACATGACCAGTATATCAGAGAGTGATGTCATCTACGCCTTCCAGGTTCCCCCTCACTTCACCAGAGGAGGTTCCATGCGGTTCTCAGATTTCAAAGGTCACAGGCTACCGCCATCAGGGACGTTATCAACAGAATTCTTGAATCATGGGGGCTCTTCAAAAGTCCTTCTCTTAATCTGCAATGTTGCTGGCTCTGGCCAACAGGCTACAAGGTTCGGGCCACCATTTCTGATGAGAGTAGAAAGGACTCTTTCTTGGGATCATCTGCAACAGAGTGTCTGCAATAAGCTTTACGTTTTTCAAAAAACTGCAATAATAAAGGTTAGTACTACTGAACTGTTTAAAGTGCGTGTGGTGGGTGGATCAGCCTCCTGCAGTTATCTGTCTCCGCACGACAGCAGACCTCTGTGCCATCCCACCGTAGACAGAGCCCTCAAGTTATGTGGTCCAGGTGGTCCTTTGCATGTGAAGCTCATAATTGAATGGGACAACAAAATTAAAGAATGCCTCTTTGGCAATATTCAAGAGGAGGTGATTGAGGATGCAGAGAGTGTGAGAATCCAGCAGCAGAATCATGTACAACAGCACAGCTGCACACTGGATGACTGTTTTCAGCTCTACACCAAAGAGGAGCAGCTGGCACCAGACGATGCATGGAAGTGCCCCCACTGTAAGCAAATGCAGCAGGGAATGGTGAAGATGAGTTTATGGACACTGCCCGACATCCTCATTCTGCACCTGAAGCGTTTTCGACAGGTGGGCAAACGGCGAAACAAGCTCTCCACCCTCATTCGCTTTCCTGTAAGTGCTCTGGATATGACCCCCCATGTGGTGAAACGCAGTCAAAGCATGAAGAATCTGGCCCCGTTGCCTTCAACTTGGAAGCATGGAGAAACTGACTTTCTTTATGACTTGTATGCAGTTTGCAACCACCACGGAGGCATGCATGGAGGCCATTACACAGCCTATTGCAGGAACTCCGTGGACGGCCACTGGTACAGTTATGATGACAGCAGTGTGGAGATTGTGCCAGAGGAGGAACTGTGCACACGAGGGGCTTATATCCTGTTCTACCAGAGGAGAAATGTCATCCCACCCTGGTCTGCCAACAGCTCGGTCAGAGGTTCCACCAGCTCCTCGATGTCAGATCACTGGCTCATCCGTTTGAATGGTGACAGTAAAAGAGGAAGTATGGTTTCACGGTCTTCTACAACATGCCCTTCTTCCATCGCTGACTCCCCAGAGTCAccagtttttaaaaatgaaccCTCAATTGAGGAAAGAGGTGGGTTTGAAAGCAGACCTTTTGTGCGAGGAATCCAAGGTCGTAGTGTAAGCATGAGAAGTCCCACCAAGAGTAAAGTGCTCCCACTGCGATGGTCTTTTGGAAATAAAGACCGCCACAAACCTGTGCCGGCTTCTGAGCAGTCTCCTGCAGAACTGGTGGAGTATTTAGAGTCTGGGAGGAGACCAAGATGTACCAAAGACCCTATTGTTTCCCTAATGACTCGACCTTCAGACAAAGACAACGATGCAAAAAAAACAGCCAAATCTTCCAGCCACAGTGGCCTCAGACCTCCAGAATATCTGAAAATACCACAGGGTCAAGAAAGAAGTAGCTCAGAGAAAGCAATGGGCCAACAACCTGCCAGCAGCAGTAGATCAAGAGAAGAAGGGACCTTGACCAGACGGAGCAGCAGAAAATCTAAACCGGACCAATCACACTCCAGGAAGAGCTCTGGAGCAGGGATCCAGTCCAGTTGTAGTACTCCAAGTGGCTGGGAAACAGCACAGAAGCATGAGTCGAGTGACAAGCGTGACCAATCAGAGGATAAACATAAAAAAGGGCAGGAGACTAAACGTCATGATGTCTTCGCTTTTCTCAAAGGTGGCTTTATCAAGAAGGATTCCCTTCGGAAGTCTCGGGATAATGATTCTGTCAAAAAGGCTGATTCAGGGGTGAAGAGCCCATCTGGAGTTTCCCTCTCCAACGGGACACATAATAAAAATCCAGAAGGTAAAGTCAGTACTATGAACCATGGTAGCAGGCACGGAAGTGAACTGGCAAATGGCAAGGTGAGTCGTGGTTCCTCAGACATCAAACGCTCACAAAGCTCATCCAATATTCAAAGCAAAACTGATCTAGGCTTAAGAAGAACAGCATCTTTACACAGAAACGGCACATCGGTGGCCCAACCACAGAGCGTGACAGGGGACAGGGGCTCTCAGAGCACTTTACAACGCACACGCTACAGCACAAACTCACTGGGCAGAAAGAAGGCAGTGCCTGAATCAAGTTTCTAA

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100211-1 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human USP43 (ubiquitin specific peptidase 43).

Ensembl:

ensembl_id ENSDART00000159749

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064724 lncRNA downstream 41235 19439100 ~ 19440159 (-) True XLOC_032793
TCONS_00063771 lncRNA downstream 921194 18557421 ~ 18560200 (-) False XLOC_032776
TCONS_00063769 lncRNA downstream 950144 18530367 ~ 18531250 (-) True XLOC_032775
TCONS_00063766 lncRNA downstream 950465 18529386 ~ 18530929 (-) False XLOC_032775
TCONS_00063760 lncRNA downstream 1091224 18389169 ~ 18390170 (-) False XLOC_032772
TCONS_00063812 lncRNA upstream 6831 19671679 ~ 19672339 (-) True XLOC_032795
TCONS_00065130 lncRNA upstream 536480 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00063818 lncRNA upstream 537161 20202009 ~ 20288898 (-) False XLOC_032800
TCONS_00063819 lncRNA upstream 537161 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00065131 lncRNA upstream 560589 20225437 ~ 20226644 (-) True XLOC_032801
TCONS_00063805 mRNA downstream 99401 19344749 ~ 19381993 (-) False XLOC_032791
TCONS_00063807 mRNA downstream 102412 19345034 ~ 19378982 (-) True XLOC_032791
TCONS_00063806 mRNA downstream 129899 19344779 ~ 19351495 (-) False XLOC_032791
TCONS_00063803 mRNA downstream 140208 19334499 ~ 19341186 (-) False XLOC_032790
TCONS_00063804 mRNA downstream 140210 19334954 ~ 19341184 (-) True XLOC_032790
TCONS_00063811 mRNA upstream 2771 19667619 ~ 19683406 (-) False XLOC_032795
TCONS_00063814 mRNA upstream 139200 19804048 ~ 19926657 (-) False XLOC_032797
TCONS_00063815 mRNA upstream 181131 19845979 ~ 19926657 (-) True XLOC_032797
TCONS_00063826 mRNA upstream 1014042 20678890 ~ 20707846 (-) True XLOC_032821
TCONS_00063828 mRNA upstream 1100000 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063808 other downstream 88417 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063797 other downstream 210251 19266217 ~ 19271143 (-) True XLOC_032786
TCONS_00063791 other downstream 334176 19146424 ~ 19147218 (-) True XLOC_032784
TCONS_00063790 other downstream 342760 19137841 ~ 19138634 (-) True XLOC_032783
TCONS_00063772 other downstream 921259 18557829 ~ 18560135 (-) True XLOC_032776
TCONS_00063813 other upstream 51575 19716423 ~ 19716541 (-) True XLOC_032796
TCONS_00063816 other upstream 471211 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063817 other upstream 513588 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063821 other upstream 634703 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063822 other upstream 672296 20337144 ~ 20337241 (-) True XLOC_032806

Expression Profile

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