RNA id: TCONS_00065132


Basic Information

Item Value
RNA id TCONS_00065132
length 371
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_032802
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20284289 ~ 20432247 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGCAGTTGAGGGGGGCTCGTGGCCCAGTAGAGCTTTACCCCTGAGACTAACAAGGGGAACAGTGGAGATAAACTGGAAGACCTGGAGCTCGGCAAAgaggtagaactgcttgaacagactgaaaAATGGAGTTAGTTTCCAAAGAAATTTATTGAGATTAATTAtagacctgatatctttctctttggcagattTGTACGAAGCATGTGGAAGAACAGGGAAACACACCTCAGTAATCACAAGTGCATCATAATAAATTAGGTacagccttacatttttaagttgaatcaaattaacttcatcaaacattttaatttaaatatttatatttttacagagtGATAGTCGGGTATTTTCtttggacggacg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065131 lncRNA downstream 57645 20225437 ~ 20226644 (-) True XLOC_032801
TCONS_00065130 lncRNA downstream 82207 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00063812 lncRNA downstream 611950 19671679 ~ 19672339 (-) True XLOC_032795
TCONS_00064724 lncRNA downstream 844130 19439100 ~ 19440159 (-) True XLOC_032793
TCONS_00063771 lncRNA downstream 1724089 18557421 ~ 18560200 (-) False XLOC_032776
TCONS_00065133 lncRNA upstream 3115 20287774 ~ 20288413 (-) True XLOC_032800
TCONS_00064726 lncRNA upstream 29632 20314291 ~ 20316167 (-) False XLOC_032804
TCONS_00064725 lncRNA upstream 29632 20314291 ~ 20316167 (-) True XLOC_032804
TCONS_00065134 lncRNA upstream 43150 20327809 ~ 20332996 (-) True XLOC_032805
TCONS_00065135 lncRNA upstream 74863 20359522 ~ 20360276 (-) True XLOC_032807
TCONS_00063814 mRNA downstream 357632 19804048 ~ 19926657 (-) False XLOC_032797
TCONS_00063815 mRNA downstream 357632 19845979 ~ 19926657 (-) True XLOC_032797
TCONS_00063811 mRNA downstream 600883 19667619 ~ 19683406 (-) False XLOC_032795
TCONS_00063810 mRNA downstream 619175 19481394 ~ 19665114 (-) True XLOC_032794
TCONS_00063809 mRNA downstream 619441 19481394 ~ 19664848 (-) False XLOC_032794
TCONS_00063826 mRNA upstream 394231 20678890 ~ 20707846 (-) True XLOC_032821
TCONS_00063828 mRNA upstream 480189 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063827 mRNA upstream 480189 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063829 mRNA upstream 636883 20921542 ~ 20952187 (-) True XLOC_032823
TCONS_00063830 mRNA upstream 784124 21068783 ~ 21091948 (-) True XLOC_032826
TCONS_00063817 other downstream 105756 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063816 other downstream 148133 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063813 other downstream 567748 19716423 ~ 19716541 (-) True XLOC_032796
TCONS_00063808 other downstream 891312 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063797 other downstream 1013146 19266217 ~ 19271143 (-) True XLOC_032786
TCONS_00063821 other upstream 14892 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063822 other upstream 52485 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063823 other upstream 124898 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063824 other upstream 179743 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063825 other upstream 362568 20647227 ~ 20647333 (-) True XLOC_032820

Expression Profile

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