RNA id: TCONS_00063820



Basic Information


Item Value
RNA id TCONS_00063820
length 1088
lncRNA type lincRNA
GC content 0.41
exon number 3
gene id XLOC_032802
representative True

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20284289 ~ 20432247 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GAAATCCATTGAGATTAAATAAAGACCTcatatctttctctttgacaggttggcatggagcatgtggaggAACAGGGAAACACACCTTAGTAATGACAAGTGCATCGTAATAAATTAGATACAGACTTACACTTTTTTAGGTTGAATTATAttaactttataaaacatttaaaatcatataCTTTCATTTGTACATACTAGATGATGGTCTGGAATCTCTTTAAGTCAGATAAATGTCTTGTTTGcggcaggtgtttctttttcctgtaatggacacacaacagacagaagaaggagactcacaagagcatcggtgGAGATTTGTCTGAAAACCGCTGGTTAACAGTTTGTGCATTTctggagttcagcaagcatgtagagctctgttagttgtGTCTTTATCTTTTCCAGGctggagtgcagcatgtggagacaaataggaatcacacacctcagcaatggacactgatggtcaggaATATCCTTTAAAGGCAGATGAatgggtgcatggatggatgttcttccaagtggaagggggtggtggtgggcatagattgttagatatatgtcttgtctgtggctgttatttacaACTACAACAGGCAGAAGAGTCAGACTCACGAGCAAAATGGTGAATATTTATCTGAGGAACACTGGAGAACGTTTGGTTTATTGATGCAGATCATCCAGCAAGTAGAGctttgttagtcttgtttttgtcttttgcagattagaCTGGGGCCTGTGGAGAAATGGGACTCGCACCTCAGCATGACTGGAAACTGATGgtctgggctgcgtttcccaaacaacgaaTTGAGGGGGGCTCGTGGCCCAGTAGAGCTTTACCCCTGAGACTAACAAGGGGAACAGTGGAGATAAACTGGAAGACCTGGAGCTCGGCAAAgagattTGTACGAAGCATGTGGAAGAACAGGGAAACACACCTCAGTAATCACAAGTGCATCATAATAAATTAGGTacagccttacatttttaagttgaatcaaattaacttcatcaaacattttaatttaaatatttatatttttacagagtGATAGTCGGGTATTTTCtttggacggacg

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194397

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00065131 lncRNA downstream 57645 20225437 ~ 20226644 (-) True XLOC_032801
TCONS_00065130 lncRNA downstream 82207 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00063812 lncRNA downstream 611950 19671679 ~ 19672339 (-) True XLOC_032795
TCONS_00064724 lncRNA downstream 844130 19439100 ~ 19440159 (-) True XLOC_032793
TCONS_00063771 lncRNA downstream 1724089 18557421 ~ 18560200 (-) False XLOC_032776
TCONS_00065139 lncRNA upstream 4697 20436944 ~ 20437403 (-) True XLOC_032812
TCONS_00065140 lncRNA upstream 5852 20438099 ~ 20439334 (-) True XLOC_032813
TCONS_00065141 lncRNA upstream 58741 20490988 ~ 20491447 (-) True XLOC_032815
TCONS_00065142 lncRNA upstream 59896 20492143 ~ 20493378 (-) True XLOC_032816
TCONS_00065143 lncRNA upstream 105552 20537799 ~ 20538169 (-) True XLOC_032817
TCONS_00063814 mRNA downstream 357632 19804048 ~ 19926657 (-) False XLOC_032797
TCONS_00063815 mRNA downstream 357632 19845979 ~ 19926657 (-) True XLOC_032797
TCONS_00063811 mRNA downstream 600883 19667619 ~ 19683406 (-) False XLOC_032795
TCONS_00063810 mRNA downstream 619175 19481394 ~ 19665114 (-) True XLOC_032794
TCONS_00063809 mRNA downstream 619441 19481394 ~ 19664848 (-) False XLOC_032794
TCONS_00063826 mRNA upstream 246643 20678890 ~ 20707846 (-) True XLOC_032821
TCONS_00063828 mRNA upstream 332601 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063827 mRNA upstream 332601 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063829 mRNA upstream 489295 20921542 ~ 20952187 (-) True XLOC_032823
TCONS_00063830 mRNA upstream 636536 21068783 ~ 21091948 (-) True XLOC_032826
TCONS_00063817 other downstream 105756 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063816 other downstream 148133 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063813 other downstream 567748 19716423 ~ 19716541 (-) True XLOC_032796
TCONS_00063808 other downstream 891312 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063797 other downstream 1013146 19266217 ~ 19271143 (-) True XLOC_032786
TCONS_00063824 other upstream 32155 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063825 other upstream 214980 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063850 other upstream 2108735 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063855 other upstream 2962596 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063859 other upstream 3523127 23955374 ~ 24053616 (-) False XLOC_032853

Expression Profile


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