RNA id: TCONS_00064725


Basic Information

Item Value
RNA id TCONS_00064725
length 404
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id XLOC_032804
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20314291 ~ 20316167 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttagtataatatacacgcgcttttttttctgtttctccgagtccgcctgacgaccgacctgtttctccggacctgtttctccgcctgACGGCGACCTGTTTCTCCGCCTGACGCCCGAGCTGTTGCTCCGCCTGACGCCCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCGCCTCACGCCCGACCTGCTGCTCCGCCTCACAGCCAGCCTGTTGATCGGTGGACGGGAAAGCGCGCATGGCATCGGAAGGAGCTTGAAAAGTATAAGgtgatgacaatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATAGAATTCAGAGGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063818 lncRNA downstream 25393 20202009 ~ 20288898 (-) False XLOC_032800
TCONS_00065133 lncRNA downstream 25878 20287774 ~ 20288413 (-) True XLOC_032800
TCONS_00065132 lncRNA downstream 29632 20284289 ~ 20284659 (-) False XLOC_032802
TCONS_00065131 lncRNA downstream 87647 20225437 ~ 20226644 (-) True XLOC_032801
TCONS_00065130 lncRNA downstream 112209 20201328 ~ 20202082 (-) False XLOC_032800
TCONS_00065134 lncRNA upstream 11642 20327809 ~ 20332996 (-) True XLOC_032805
TCONS_00065135 lncRNA upstream 43355 20359522 ~ 20360276 (-) True XLOC_032807
TCONS_00065136 lncRNA upstream 66286 20382453 ~ 20382910 (-) True XLOC_032808
TCONS_00065137 lncRNA upstream 67463 20383630 ~ 20384731 (-) True XLOC_032809
TCONS_00065138 lncRNA upstream 96941 20413108 ~ 20467743 (-) True XLOC_032811
TCONS_00063814 mRNA downstream 387634 19804048 ~ 19926657 (-) False XLOC_032797
TCONS_00063815 mRNA downstream 387634 19845979 ~ 19926657 (-) True XLOC_032797
TCONS_00063811 mRNA downstream 630885 19667619 ~ 19683406 (-) False XLOC_032795
TCONS_00063810 mRNA downstream 649177 19481394 ~ 19665114 (-) True XLOC_032794
TCONS_00063809 mRNA downstream 649443 19481394 ~ 19664848 (-) False XLOC_032794
TCONS_00063826 mRNA upstream 362723 20678890 ~ 20707846 (-) True XLOC_032821
TCONS_00063828 mRNA upstream 448681 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063827 mRNA upstream 448681 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063829 mRNA upstream 605375 20921542 ~ 20952187 (-) True XLOC_032823
TCONS_00063830 mRNA upstream 752616 21068783 ~ 21091948 (-) True XLOC_032826
TCONS_00063821 other downstream 14643 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063817 other downstream 135758 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063816 other downstream 178135 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063813 other downstream 597750 19716423 ~ 19716541 (-) True XLOC_032796
TCONS_00063808 other downstream 921314 19392860 ~ 19392977 (-) True XLOC_032792
TCONS_00063822 other upstream 20977 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063823 other upstream 93390 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063824 other upstream 148235 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063825 other upstream 331060 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063850 other upstream 2224815 22540982 ~ 22541076 (-) True XLOC_032844

Expression Profile

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