RNA id: TCONS_00065137


Basic Information

Item Value
RNA id TCONS_00065137
length 1102
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_032809
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20383630 ~ 20384731 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCAGAAGAAGGAGAACGGTGGAGATATACTTGAAGACCTGGAGCTCATGAAGCAGGTAGTGCTGCTTGAACAGACTAAACAATGGAGTTAGTTtcaaaagaaatgtattaaaattagttaaagacctgatatctttctctttgacaggttggcatggagcatgtgaaggaacagggaaacacactgtaatgacaagtgcatcgtaataaattaggtacagccttaaactttaagttgagtcaactgaactttataaaacattttaaacttatacaattacatttttacagagtaAGTGTCACAGAAGGGACGACATTCAGTTCAGTAATATAACAGGACGTCAGGTGAGTATAAGCAGGTGAGTTTATTGATGCAGATAATAAGTCCATTAACCTGAATTGGATATTTGATTATGCAGGCTTGGAGACTGGAGACGGATACCACAGACAGCAAACAGGATGAAGACTAAACGAGGAACCAGGAGACACCTCACTAGGAGAGACACTGGAACTCACAGGAGATGTGCTTGTGGTGCTTCAGTGAGTGGAAAACCTGGTCTTAATGGGGCAGTAAGTGGTTGTCAGATATTTCCTTCAGATAGACAGAAATagatacaatatttttgtttgtatgcttCATTTGTATATCGCTATCTAACTTAACATTTGcagattgttatttgttatatgatCGGATAAATTGATCTGTTCTAATGTATTTGTATGCTGTCAGAGTTACCACATTGAATATTACTGCACGTCTGTTGTCagatagattgtctggctgttgtattatttattagtaatttatgCTGTTGGCCTGTTCAACATTTGtagcttttgattgttttttgttttatttacagttttactaatTATTGTAGCACATTTATCTCTTCTAAGTTTATAGATTGTCATCTAGTAGAGTATTTACTTATAggtgtgaaatattatttgttagttttagaaCAGAACCAGACTGGAGACAATGGTAGATGAAACTTCCAAAGAATGGTATTAGATTAATGAATGACTTGACatctttctattgtattttacagATCAGATGGCACCACATGGAGAAAAgaaggaatcacacac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065136 lncRNA downstream 720 20382453 ~ 20382910 (-) True XLOC_032808
TCONS_00063819 lncRNA downstream 22897 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00065135 lncRNA downstream 23354 20359522 ~ 20360276 (-) True XLOC_032807
TCONS_00065134 lncRNA downstream 50634 20327809 ~ 20332996 (-) True XLOC_032805
TCONS_00064726 lncRNA downstream 67463 20314291 ~ 20316167 (-) False XLOC_032804
TCONS_00065138 lncRNA upstream 28377 20413108 ~ 20467743 (-) True XLOC_032811
TCONS_00065139 lncRNA upstream 52213 20436944 ~ 20437403 (-) True XLOC_032812
TCONS_00065140 lncRNA upstream 53368 20438099 ~ 20439334 (-) True XLOC_032813
TCONS_00065141 lncRNA upstream 106257 20490988 ~ 20491447 (-) True XLOC_032815
TCONS_00065142 lncRNA upstream 107412 20492143 ~ 20493378 (-) True XLOC_032816
TCONS_00063814 mRNA downstream 456973 19804048 ~ 19926657 (-) False XLOC_032797
TCONS_00063815 mRNA downstream 456973 19845979 ~ 19926657 (-) True XLOC_032797
TCONS_00063811 mRNA downstream 700224 19667619 ~ 19683406 (-) False XLOC_032795
TCONS_00063810 mRNA downstream 718516 19481394 ~ 19665114 (-) True XLOC_032794
TCONS_00063809 mRNA downstream 718782 19481394 ~ 19664848 (-) False XLOC_032794
TCONS_00063826 mRNA upstream 294159 20678890 ~ 20707846 (-) True XLOC_032821
TCONS_00063828 mRNA upstream 380117 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063827 mRNA upstream 380117 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063829 mRNA upstream 536811 20921542 ~ 20952187 (-) True XLOC_032823
TCONS_00063830 mRNA upstream 684052 21068783 ~ 21091948 (-) True XLOC_032826
TCONS_00063822 other downstream 46389 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063821 other downstream 83982 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063817 other downstream 205097 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063816 other downstream 247474 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063813 other downstream 667089 19716423 ~ 19716541 (-) True XLOC_032796
TCONS_00063823 other upstream 24826 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063824 other upstream 79671 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063825 other upstream 262496 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063850 other upstream 2156251 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063855 other upstream 3010112 23394843 ~ 23394899 (-) True XLOC_032849