RNA id: TCONS_00065138


Basic Information

Item Value
RNA id TCONS_00065138
length 215
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id XLOC_032811
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20413108 ~ 20467743 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATAGTGTTATTCTGAATGTCTTAACACCCTTGGCAGTCTTTATCCAGTATAACATCATATAACAGGTTATGTCACCATATACAAAATAGATCATGCGTTTTGCAaagataatcatttatttaaggtCTAAGAAAACAAGAACTGACTACAATCTTTAAGTTATGATTGCTGCTGAATGACGCATTGTATGACTTAATttcatgatttttcttt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065137 lncRNA downstream 28377 20383630 ~ 20384731 (-) True XLOC_032809
TCONS_00065136 lncRNA downstream 30198 20382453 ~ 20382910 (-) True XLOC_032808
TCONS_00063819 lncRNA downstream 52375 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00065135 lncRNA downstream 52832 20359522 ~ 20360276 (-) True XLOC_032807
TCONS_00065134 lncRNA downstream 80112 20327809 ~ 20332996 (-) True XLOC_032805
TCONS_00065141 lncRNA upstream 23245 20490988 ~ 20491447 (-) True XLOC_032815
TCONS_00065142 lncRNA upstream 24400 20492143 ~ 20493378 (-) True XLOC_032816
TCONS_00065143 lncRNA upstream 70056 20537799 ~ 20538169 (-) True XLOC_032817
TCONS_00065144 lncRNA upstream 95290 20563033 ~ 20564119 (-) True XLOC_032818
TCONS_00065145 lncRNA upstream 142449 20610192 ~ 20612426 (-) False XLOC_032819
TCONS_00063814 mRNA downstream 486451 19804048 ~ 19926657 (-) False XLOC_032797
TCONS_00063815 mRNA downstream 486451 19845979 ~ 19926657 (-) True XLOC_032797
TCONS_00063811 mRNA downstream 729702 19667619 ~ 19683406 (-) False XLOC_032795
TCONS_00063810 mRNA downstream 747994 19481394 ~ 19665114 (-) True XLOC_032794
TCONS_00063809 mRNA downstream 748260 19481394 ~ 19664848 (-) False XLOC_032794
TCONS_00063826 mRNA upstream 211147 20678890 ~ 20707846 (-) True XLOC_032821
TCONS_00063828 mRNA upstream 297105 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063827 mRNA upstream 297105 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063829 mRNA upstream 453799 20921542 ~ 20952187 (-) True XLOC_032823
TCONS_00063830 mRNA upstream 601040 21068783 ~ 21091948 (-) True XLOC_032826
TCONS_00063823 other downstream 3454 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063822 other downstream 75867 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063821 other downstream 113460 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063817 other downstream 234575 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063816 other downstream 276952 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063825 other upstream 179484 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063850 other upstream 2073239 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063855 other upstream 2927100 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063859 other upstream 3487631 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063876 other upstream 4318084 24785827 ~ 24785943 (-) True XLOC_032864

Expression Profile

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