RNA id: TCONS_00065139


Basic Information

Item Value
RNA id TCONS_00065139
length 460
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_032812
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20436944 ~ 20437403 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtataaGTTCATAGTGTATagcgtgccatttgggacgcagcttttgtcATTTGTAGGTTGGAGTGGAGCAGAAGTAGAAGAGTCACAGGAACAGTGGAAATATACTTGAAAATCTGGGGCTCAGGAAacaggtagaactgcttgaacagactaaacaatggagtttgtttCCAAAGAAATATATTGAGATtaaagacctgatatctttctctttgacaggttggcatggagcatgtggagaaacaGCGAACCACACATCAGTATTGACAAGTACATCGTAATAAATTAGGTATAGACttacatttttagttgaatcaaattaacttaataaaacatttttaaattatatactttaatttgtaaagactAAGTGATGATTGGGTATTTCCTTCAGATACAGTAAATAGTTAGATAGATGTCTTGTCTGCcgcaggtgtttctttttcaggtaatggaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063820 lncRNA downstream 4697 20284289 ~ 20432247 (-) True XLOC_032802
TCONS_00065137 lncRNA downstream 52213 20383630 ~ 20384731 (-) True XLOC_032809
TCONS_00065136 lncRNA downstream 54034 20382453 ~ 20382910 (-) True XLOC_032808
TCONS_00063819 lncRNA downstream 76211 20202009 ~ 20360733 (-) False XLOC_032800
TCONS_00065135 lncRNA downstream 76668 20359522 ~ 20360276 (-) True XLOC_032807
TCONS_00065140 lncRNA upstream 696 20438099 ~ 20439334 (-) True XLOC_032813
TCONS_00065141 lncRNA upstream 53585 20490988 ~ 20491447 (-) True XLOC_032815
TCONS_00065142 lncRNA upstream 54740 20492143 ~ 20493378 (-) True XLOC_032816
TCONS_00065143 lncRNA upstream 100396 20537799 ~ 20538169 (-) True XLOC_032817
TCONS_00065144 lncRNA upstream 125630 20563033 ~ 20564119 (-) True XLOC_032818
TCONS_00063814 mRNA downstream 510287 19804048 ~ 19926657 (-) False XLOC_032797
TCONS_00063815 mRNA downstream 510287 19845979 ~ 19926657 (-) True XLOC_032797
TCONS_00063811 mRNA downstream 753538 19667619 ~ 19683406 (-) False XLOC_032795
TCONS_00063810 mRNA downstream 771830 19481394 ~ 19665114 (-) True XLOC_032794
TCONS_00063809 mRNA downstream 772096 19481394 ~ 19664848 (-) False XLOC_032794
TCONS_00063826 mRNA upstream 241487 20678890 ~ 20707846 (-) True XLOC_032821
TCONS_00063828 mRNA upstream 327445 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063827 mRNA upstream 327445 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063829 mRNA upstream 484139 20921542 ~ 20952187 (-) True XLOC_032823
TCONS_00063830 mRNA upstream 631380 21068783 ~ 21091948 (-) True XLOC_032826
TCONS_00063823 other downstream 27290 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063822 other downstream 99703 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063821 other downstream 137296 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063817 other downstream 258411 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063816 other downstream 300788 20136059 ~ 20136156 (-) True XLOC_032798
TCONS_00063824 other upstream 26999 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063825 other upstream 209824 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063850 other upstream 2103579 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063855 other upstream 2957440 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063859 other upstream 3517971 23955374 ~ 24053616 (-) False XLOC_032853