RNA id: TCONS_00065142


Basic Information

Item Value
RNA id TCONS_00065142
length 1236
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_032816
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20492143 ~ 20493378 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagggagactcacaagagcatcggtggagatttctctaaaaaatgctggagaACAGCAGTTGGGGTTTTGTTGGGGCTGTCTTTGTTTATTTGCagattggagtggagcagaagaagGAGAACGGTGGAGATATACTTGAAGACCTGGAGCTCATGAAGCAGGTAGTGCTGCTTGAACAGACTAAACAATGGAGTTAGTTTCAAAAGAAATGTATTAAGATTAGTtaaagacctgatatctttctctttgacaggttggcatggagcatgtgaaggaacagggaaacacactgtaatgacaagtgcatcgtaataaattaggtacagccttaaactttaagttgagtcaactgaactttataaaacattttaaacttatacaattacatttttacagagtaAGTGTCACAGAAGGGACGACATTCAGTTCAGTAATATAACAGGACGTCAGGTGAGTATAAGCAGGTGAGTTTATTGATGCAGATAATAAGTCCATTAACCTGAATTGGATATTTGATTATGCAGGCTTGGAGACTGGAGACGGATACCACAGACAGCAAACAGGATGAAGACTAAACGAGGAACCAGGAGACACCTCACTAGGAGAGACACTGGAACTCACAGGAGATGTGCTTGTGGTGCTTCAGTGAGTGGAAAACCTGGTCTTAATGGGGCAGTAAGTGGTTGTCAGATATTTCCTTCAGATAGACAGAAATagatacaatatttttgtttgtttgtatgattCAATTGTATATCGCTATCTAACTTAACATTTGcagattgttatttgttatatgatCGGATAAATTGATCTGTTCTAATTTATTTGTATGCTGTCAGAGTTACCACATTGAATATTACTGCACGTCTGTTGTCagatagattgtctggctgttgtattatttattagtaatttatgCTGTTGGCCTGTTCAACATTTGtagcttttgattgttttttgttttatttacagttttactaatTATTGTAGCACATTTATCTCTTCTAAGTTTATAGATTGTCATCTAGTAGAGTATTTACTTATAggtgtgaaatattatttgttagttttagaaCAGAACCAGACTGGAGACAATGGTAGATGAAACTTCCAAAGAATGGTATTAGATTAATGAATGACTTGACatctttctattgtattttacagATCAGATGGCACCACATGGAGAAAAgaaggaatcacacacctcagcaacgACTGGATGGTcagg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065141 lncRNA downstream 696 20490988 ~ 20491447 (-) True XLOC_032815
TCONS_00065138 lncRNA downstream 24400 20413108 ~ 20467743 (-) True XLOC_032811
TCONS_00065140 lncRNA downstream 52809 20438099 ~ 20439334 (-) True XLOC_032813
TCONS_00065139 lncRNA downstream 54740 20436944 ~ 20437403 (-) True XLOC_032812
TCONS_00065137 lncRNA downstream 107412 20383630 ~ 20384731 (-) True XLOC_032809
TCONS_00065143 lncRNA upstream 44421 20537799 ~ 20538169 (-) True XLOC_032817
TCONS_00065144 lncRNA upstream 69655 20563033 ~ 20564119 (-) True XLOC_032818
TCONS_00065145 lncRNA upstream 116814 20610192 ~ 20612426 (-) False XLOC_032819
TCONS_00064727 lncRNA upstream 118980 20612358 ~ 20613182 (-) True XLOC_032819
TCONS_00064728 lncRNA upstream 296500 20789878 ~ 20793634 (-) False XLOC_032822
TCONS_00063814 mRNA downstream 565486 19804048 ~ 19926657 (-) False XLOC_032797
TCONS_00063815 mRNA downstream 565486 19845979 ~ 19926657 (-) True XLOC_032797
TCONS_00063811 mRNA downstream 808737 19667619 ~ 19683406 (-) False XLOC_032795
TCONS_00063810 mRNA downstream 827029 19481394 ~ 19665114 (-) True XLOC_032794
TCONS_00063809 mRNA downstream 827295 19481394 ~ 19664848 (-) False XLOC_032794
TCONS_00063826 mRNA upstream 185512 20678890 ~ 20707846 (-) True XLOC_032821
TCONS_00063828 mRNA upstream 271470 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063827 mRNA upstream 271470 20764848 ~ 20875111 (-) False XLOC_032822
TCONS_00063829 mRNA upstream 428164 20921542 ~ 20952187 (-) True XLOC_032823
TCONS_00063830 mRNA upstream 575405 21068783 ~ 21091948 (-) True XLOC_032826
TCONS_00063824 other downstream 27644 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063823 other downstream 82489 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063822 other downstream 154902 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063821 other downstream 192495 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063817 other downstream 313610 20178436 ~ 20178533 (-) True XLOC_032799
TCONS_00063825 other upstream 153849 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063850 other upstream 2047604 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063855 other upstream 2901465 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063859 other upstream 3461996 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063876 other upstream 4292449 24785827 ~ 24785943 (-) True XLOC_032864