RNA id: TCONS_00064733


Basic Information

Item Value
RNA id TCONS_00064733
length 856
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_032829
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 21496479 ~ 21498035 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agggtgtaattgttaaaaataggtacaaacataagatataaacaaaaacctaaacaaacacttctatgtacataacgtcataaaaatacttgttttatttacctcgcgctgccgtccttgtactgccgtgaacaggaaattctgggaatggaggacggagagttgaatcgattcgtcttcaacaaaccgatcagtgtgacatcaaaacatcgcgagaacaacagacagctccgtgtgcatttgaatccatctcgcgatattgtatcacttcaggtacgcgcctactgattcgttgattcaaacgagttgtgaatcaagaagccttaagatccgaatcaaactgcagcagcacgccacgaggttttgctcagacttttgggacgtttggaattgctccgtcttgtcaccatgtaacacatagcagcaagacccatgggatttcatcagccactcaccatcagagtcctcagtggaagctgagaagagcagaagaggaagccaagcaagagatgccagaaaaaaagggggaaggaaataatgtgttatttagctgtttgagtataggcaggcgtagtgggtagcacaatcgcctcacagcaagaaggtcgctggttcgagcctcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctcccacaagtccaaaaatatgtggtgacattgggtaaggtaaaattgtccgtagtgtatgtgtgtgaatgagtatgtatggatgtttcccagtgatgggttgcagctgggtggcaacacggtggcacagtaggtagtgctgtttcctcacatcaagaaggt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064732 lncRNA downstream 465771 21030441 ~ 21030708 (-) True XLOC_032825
TCONS_00064731 lncRNA downstream 483432 21012606 ~ 21013047 (-) True XLOC_032824
TCONS_00065146 lncRNA downstream 622136 20814723 ~ 20874343 (-) False XLOC_032822
TCONS_00064730 lncRNA downstream 622136 20817508 ~ 20874343 (-) True XLOC_032822
TCONS_00064729 lncRNA downstream 674359 20814723 ~ 20822120 (-) False XLOC_032822
TCONS_00064734 lncRNA upstream 6468 21504503 ~ 21508878 (-) False XLOC_032830
TCONS_00065147 lncRNA upstream 8858 21506893 ~ 21509039 (-) True XLOC_032830
TCONS_00064735 lncRNA upstream 34270 21532305 ~ 21534232 (-) True XLOC_032832
TCONS_00064736 lncRNA upstream 79825 21577860 ~ 21582638 (-) True XLOC_032833
TCONS_00064737 lncRNA upstream 91377 21589412 ~ 21597616 (-) True XLOC_032834
TCONS_00063833 mRNA downstream 3727 21470261 ~ 21492752 (-) False XLOC_032828
TCONS_00063832 mRNA downstream 3727 21470261 ~ 21492752 (-) True XLOC_032828
TCONS_00063831 mRNA downstream 307184 21157195 ~ 21189295 (-) True XLOC_032827
TCONS_00063830 mRNA downstream 404531 21068783 ~ 21091948 (-) True XLOC_032826
TCONS_00063829 mRNA downstream 544292 20921542 ~ 20952187 (-) True XLOC_032823
TCONS_00063834 mRNA upstream 15328 21513363 ~ 21521755 (-) True XLOC_032831
TCONS_00063835 mRNA upstream 27508 21525543 ~ 21534301 (-) False XLOC_032832
TCONS_00063836 mRNA upstream 78129 21576164 ~ 21582444 (-) False XLOC_032833
TCONS_00063837 mRNA upstream 90170 21588205 ~ 21616659 (-) False XLOC_032834
TCONS_00063838 mRNA upstream 135251 21633286 ~ 21678263 (-) False XLOC_032835
TCONS_00063825 other downstream 849146 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063824 other downstream 1031980 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063823 other downstream 1086825 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063822 other downstream 1159238 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063821 other downstream 1196831 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063850 other upstream 1042947 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063855 other upstream 1896808 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063859 other upstream 2457339 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063876 other upstream 3287792 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063877 other upstream 3344135 24842170 ~ 24842286 (-) True XLOC_032865

Expression Profile

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