RNA id: TCONS_00064737


Basic Information

Item Value
RNA id TCONS_00064737
length 592
lncRNA type read_through
GC content 0.42
exon number 6
gene id XLOC_032834
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 21588205 ~ 21616659 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATATTTATGAATCAGGATGAATATTTGGGGTGGAAGTTCCCCTcgcttttatttttctttgtccaGAAACAGTGggATCACCAGTTAGACGATTCCATACATTCTTCTCTGGATTATAgaaagTTGTATCTGAGGGTGTTGCAAGAGAATGGAAATCTAAAGGAGAAGCTTCAGGAAACTCAGCTTCAGCTAAATGAGAGTAAAGTTCAGTtggagaaactcaaacagaatcaagaGAATGGATCAGACAGACCAGCCCTACTGGAGCTGGAGAGATATGAAAAGAAACTTCTTCAGCGGAGAGCATTTGAGTTAGAAGATGAACTCAAAGTGCTCGTGGATTTGCGTGCTGATAACCAGAGACTGAAGGATGAAAATGCAGCTCTCATTCGTGTCATTAGTAAGCTGTCTAAATGAACCTCTAGGTTCCTCACATTGTTTTCCTGAATTCCATGGGAACGTTCCTGTCCCCCTACCCGCCCAAAGAACCGCACAGCGTTTTGCTCACCCTCTATGATCTCTGGGACGTATGCCTCTGACTGGGGTAGATTAAACTACTGTTCTTCATATGGATATGTACATATTATAAGG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0004857 enzyme inhibitor activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0019208 phosphatase regulator activity molecular_function

KEGG:

id description
ko04510 Focal adhesion
ko04810 Regulation of actin cytoskeleton
ko04921 Oxytocin signaling pathway
ko04270 Vascular smooth muscle contraction
ko05205 Proteoglycans in cancer
ko01009 Protein phosphatases and associated proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064736 lncRNA downstream 6774 21577860 ~ 21582638 (-) True XLOC_032833
TCONS_00064735 lncRNA downstream 55180 21532305 ~ 21534232 (-) True XLOC_032832
TCONS_00065147 lncRNA downstream 80373 21506893 ~ 21509039 (-) True XLOC_032830
TCONS_00064734 lncRNA downstream 80534 21504503 ~ 21508878 (-) False XLOC_032830
TCONS_00064733 lncRNA downstream 91377 21496479 ~ 21498035 (-) True XLOC_032829
TCONS_00065148 lncRNA upstream 72574 21670190 ~ 21678210 (-) True XLOC_032835
TCONS_00064738 lncRNA upstream 583646 22181262 ~ 22181876 (-) True XLOC_032842
TCONS_00064739 lncRNA upstream 769006 22366622 ~ 22369086 (-) True XLOC_032843
TCONS_00064740 lncRNA upstream 1420437 23018053 ~ 23018480 (-) True XLOC_032846
TCONS_00064741 lncRNA upstream 1509987 23107603 ~ 23117348 (-) True XLOC_032847
TCONS_00063836 mRNA downstream 6968 21576164 ~ 21582444 (-) False XLOC_032833
TCONS_00063835 mRNA downstream 55111 21525543 ~ 21534301 (-) False XLOC_032832
TCONS_00063834 mRNA downstream 67657 21513363 ~ 21521755 (-) True XLOC_032831
TCONS_00063833 mRNA downstream 96660 21470261 ~ 21492752 (-) False XLOC_032828
TCONS_00063832 mRNA downstream 96660 21470261 ~ 21492752 (-) True XLOC_032828
TCONS_00063838 mRNA upstream 35670 21633286 ~ 21678263 (-) False XLOC_032835
TCONS_00063839 mRNA upstream 99512 21697128 ~ 21726758 (-) True XLOC_032836
TCONS_00063840 mRNA upstream 212017 21809633 ~ 21830405 (-) False XLOC_032837
TCONS_00063841 mRNA upstream 212017 21809633 ~ 21830477 (-) True XLOC_032837
TCONS_00063844 mRNA upstream 263471 21861087 ~ 21873266 (-) False XLOC_032838
TCONS_00063825 other downstream 942079 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063824 other downstream 1124913 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063823 other downstream 1179758 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063822 other downstream 1252171 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063821 other downstream 1289764 20299551 ~ 20299648 (-) True XLOC_032803
TCONS_00063850 other upstream 943366 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063855 other upstream 1797227 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063859 other upstream 2357758 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063876 other upstream 3188211 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063877 other upstream 3244554 24842170 ~ 24842286 (-) True XLOC_032865

Expression Profile

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