RNA id: TCONS_00063851


Basic Information

Item Value
RNA id TCONS_00063851
length 3530
RNA type mRNA
GC content 0.42
exon number 18
gene id XLOC_032845
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 22957709 ~ 23002373 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttataattattttatgtaacataTTATTTGTTCtgggctgcatggtggtgcagtgggtagcacggtcgCCTCACAGTCAGAAGGTTGCTGGAGTGAGCCTCAGCTGGTCAGTtggttttctgtgtggagtttgtatgttctctcagtgttagcatgggttttctccaggtgcttcggtttcccccacaagtcaacaTGTGGTGTAttgatgaattgggtaagctaattgtctgtggtgtatgtgtgtgaatgagtgtgtatatgtttcccagtaatgggaataagttgcagctggaagggcattcgcataaaactggataagttagcagttcattacgctgtggagacccaagattaataagggactaagccgaaaagaaaatgaatgaattatttgctCTTTATTTGCAcctgttttcttattttttcatgtaaatgtGTACCGATAATGTCAAGTTGTCGTACATTACTATatgttcaataataaaaaaagaaaacagaagatGGCAGCAATGTAACGTAGAGACTCGAGTGCCGTACTACGAAGAAGAAGTAATTGTCTCATCTCGCGATAGAAACAACTCGAGGGTAGAAGAAACATGGCAACGCTGTATGAGGAATACACGCTGTGTGGAGTTGGACCAGACAAGAATTCGTCCAGTTCAGGAGTTCTGGGGATTGAATTGGGAAAAGATGTTGACCACATAATTGTCACTCACTCTTCGAGAGCAGTTACAGTTTACAAGGTGTCTGATCAGAAGCCCACGGGCAGTTGGACAGTGAAACAGGGACAGTTGATCACCTGCCCCGCTGTGTATAACACAAAGTCCCAGGAATATGTGGTTGTTACAGATAATAAGGTTATCAGAGTTTGGAAAGAAGACGATGTCAATATGGAGAAGGCGTTTAAAGCCACGGTTTCATCTGATGTTCTCAGGGTGATGGCAGCTTCTGACTCTGAACCTGTTGTGTTGTTTAGTTGTGGGGCTGTCATGTTCTTGGACTCGTTGCTTGCTTCACCACAACAACCTATAGAAGGCGTTTTAACAGAGGAAGAGTTCATCAGGTGGAGTACTGTTGTTGGGGCAGAACACcagcttgttttgttgttttgcacGGAAAAGAGAGGAGAGCACTACCTGTATGCTCAAAGATTTAACCCCAACACTGTTGTGAAGCACAGATTTGAGACTGAACCTGGTCCCTTCGCTCCTATCAGTTTCTCTGCCACATGCAGAGGTAGTAATATACATCTGCAGTACTTGTATATGAGTGGCAGAATATATGAAAGTGTTTTACCACTCAGAAGTTCAGTTTCTGAAGCTGAAGGTGTCCAGGCTCTACCCCGCTCTTTGTGTCTCAGTTTACCTCTGGGGGAGCAAAAGCTGACGTCTGGTGCTGCTATTGTACTTGATGAGGCTCATGTTGCTATTGTTGGATTTCCCCACCCGTCTGCTGGAGCTGGCAAAGATTATCTTTGCATCTGGAACAAACATTTCCAAACTCTTCAGGCTTGTAAAGAATTGGCCGGAACAATCTACAGTCAGATCTGGTGTTATTCTGGAAAGCTGTACATTCCTCATGGGAAGATACTATCAGTAATTTCTTTTGAGTGCCAAAAGTCATCTCTCGCGGCTGCCATGGGAAAACTGAAGCAGACAAATCAAAGTGAATACAAATCACACACCCCCTTGTCTTCCTGGACGGCTTTGCCGCACAATGAcattataaatgcagcaaaagtCAAGAGCAGAATGTCAACCAGAAATGCTTCAAACGTCAAGTCTCCACTGACAGTAGATCAACTTATAGACCACATTAagACTGCTGTGGTAGAGGATGTGCAGTCAGCGGTGGGTGAATTTATTCATCAGACTCCTCAGACTGACCTTCAGCTTGCAGCAGGGAAAGTGACAATGGTGCTAGTGTCAAGATCCCAGACAGATGACAGCTTCTACCCTCAGCGTGCATTTCTACAACTGCTAGACACTCGTTATCTCTGCTACAGTGTTTGCCCAGAATTGTTGTCTCTGGCCATGGCAAAGAGAGATTTTCAACTCTGTCAGATTGCTTTCCAACTTTTTCCAGACATTCCTGAAGCTGTTACCTGTGCTTATCTCAAAACCATTTTGAGTACTCCAGACTCTGAGATGGAGACTCTAACCCTTGACACAGAGAGCTTAATCATCATGAAAGAAATGAGTCAAGCTCAAAGTCAAATGGAGGAAGGTGAGCAGCAGAACGAGAACGGTGTCTCTAGCAGCAAACAACAGAGGGATTTCTTGTCCATGGATATGAAGTGTCCTGTGGGATTACACAAGGGTGTCCTTCTAAATGATGTTTTGCAGACCGCATACAGTGACAAGCCTCTGCTGCAACATCTAAAAGATCTCACAGTTTTGCAGGTCATGGTCTTTTTACAGTACCTGCATTTCCTTTATCTTAAATATTCTCAAGATGTCCACAAACAAATCAGAGCTCTGCGCATCCCAAGTATTTCTCAGgtcatTGACTGGGCGTCCCTGATACTTGATGCTCATTTCACAGTTTTGGCTGTGGCACCAGAAGCCAAAAGTTTAGTGTCTGATCTTCATAAGTTCACAAGATCacagGTAAAACTGTATGCTGAACTAGGCAAAATCGAGGGAAGTCTTCAATCGCTCAAAAAGCCTAAATCCACTGAACATACTGGTGTGTACTCCATAGAAGTAATTGAGCTCTTTTAGATGACCTGCACagtttgaataaaatatttactgtcctgcatttttcactttttattttttctgtttttaaatgtctttttttaatcattcaaaaTTCTGAAATAAAGCTTTTGTGCTTAAGTCTCTACTATATTTTACATATGTTTGCTTTTGAGTCTTGTCCCGTCACCTAatgaagttttgttttgttgacattgagctaaaaaatctaattaaactaCGAAACCCAACCTTACTGTCTTCTATGGTACTGCTTAATGCTGAGTGTTTCCCTTACCATTTTATAAgagggtgtgccctgccacccatAAAAGtggattcattttcatttcatttttcataTATAGCACCAAATCCCAACAGAATTATTTGTCTTCTTTCCTACAGAACAGGTCTAtttcaattcggttcaattcatctttatttgtatagcgcttttacaatgtagattgtttcaaagtAGCTTCACacaagattatagtgaattgaaacggtgtcagtccagttttcagagtttcagtTCAGCATGGTTTAATtctcactgctgagagtccaaacactgaagagtagtCCATGGAtccgcagctctacaagtcctgaACTGTGCAGAAAAACTTCACCAAGTGGCGAAAGTAAAGGATAAGTtgagcacaaccatttctcctttgaccaaatgtcttgtgcagaggtgcagtctaggtgccagaggctggagaactcTGGATGTCAGcaaagacttgtctgtccctggagtctCATAGGATTCAGACACTCTTTACTCCTACATGACCactacagcagct

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-419 Predicted to be involved in maturation of SSU-rRNA and positive regulation of transcription of nucleolar large rRNA by RNA polymerase I. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human NOL11 (nucleolar protein 11).

Ensembl:

ensembl_id ENSDART00000037709

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064739 lncRNA downstream 588623 22366622 ~ 22369086 (-) True XLOC_032843
TCONS_00064738 lncRNA downstream 775833 22181262 ~ 22181876 (-) True XLOC_032842
TCONS_00065148 lncRNA downstream 1279499 21670190 ~ 21678210 (-) True XLOC_032835
TCONS_00064737 lncRNA downstream 1360093 21589412 ~ 21597616 (-) True XLOC_032834
TCONS_00064736 lncRNA downstream 1375071 21577860 ~ 21582638 (-) True XLOC_032833
TCONS_00064740 lncRNA upstream 15680 23018053 ~ 23018480 (-) True XLOC_032846
TCONS_00064741 lncRNA upstream 105230 23107603 ~ 23117348 (-) True XLOC_032847
TCONS_00064742 lncRNA upstream 208178 23210551 ~ 23214286 (-) False XLOC_032848
TCONS_00065149 lncRNA upstream 208178 23210551 ~ 23214794 (-) True XLOC_032848
TCONS_00064743 lncRNA upstream 417796 23420169 ~ 23421738 (-) True XLOC_032850
TCONS_00063849 mRNA downstream 588584 22352223 ~ 22369125 (-) False XLOC_032843
TCONS_00063848 mRNA downstream 811451 22119189 ~ 22146258 (-) True XLOC_032841
TCONS_00063847 mRNA downstream 893551 22043127 ~ 22064158 (-) True XLOC_032840
TCONS_00063846 mRNA downstream 969334 21874932 ~ 21988375 (-) True XLOC_032839
TCONS_00063845 mRNA downstream 995892 21874932 ~ 21961817 (-) False XLOC_032839
TCONS_00063854 mRNA upstream 105229 23107602 ~ 23117348 (-) False XLOC_032847
TCONS_00063853 mRNA upstream 105229 23107602 ~ 23117348 (-) False XLOC_032847
TCONS_00063856 mRNA upstream 614520 23616893 ~ 23619428 (-) True XLOC_032851
TCONS_00063857 mRNA upstream 888857 23891230 ~ 23931442 (-) False XLOC_032852
TCONS_00063858 mRNA upstream 906638 23909011 ~ 23930080 (-) True XLOC_032852
TCONS_00063850 other downstream 416633 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063825 other downstream 2310376 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063824 other downstream 2493210 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063823 other downstream 2548055 20409557 ~ 20409654 (-) True XLOC_032810
TCONS_00063822 other downstream 2620468 20337144 ~ 20337241 (-) True XLOC_032806
TCONS_00063855 other upstream 392470 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063859 other upstream 953001 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063876 other upstream 1783454 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063877 other upstream 1839797 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063885 other upstream 2185650 25188023 ~ 25188783 (-) True XLOC_032870

Expression Profile

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