RNA id: TCONS_00063863


Basic Information

Item Value
RNA id TCONS_00063863
length 961
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_032854
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 24055421 ~ 24066676 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCGTTGATCGCTAACCGAGCGGGTGAAGTAATGAATTAATAGATTCGGGTGCTTAAAACATTCCTCCCCGTGCTTTAGTCTAATAAGCGCGGGATCTGTTCAGTTACCCGGGCGGCTCGAGAATGAATGTTTGGAGTTGAATCATGATTATAAACGTGCACAGCAAAAGCAGCAGCACTGATGTGTGGATGTGGAGAGTCAGCGTAAACTGATCAAACCGAAAGCCTTTCGTGATCTGCTCCGAGAAAACCGACCGCACCATCTGAGTCTCCACACAAAGCCGCCGCTGCTGTCGGTGTTTTATCATCAACAAAGCCGTTGAGCCTCCTCTCCTGGTTTGACTCCTTCAAACACAGAAGCGTCTCGGCTGCTCATCCCTCATGGCATCTTCTTCGGGGAACGACGATGATCTGACCATCCCGAGGGCGGCGATCAATAAAATGATCAAAGAAACGCTTCCCAATGTGCGGGTAGCGAACGATGCCAGAGAGCTGGTGGTAAACTGCTGCACAGAGTTCATTCACCTCGTCTCATCAGAGGCCAACGAGATCTGCAATAAATCAGAAAAGAAAACTATATCCCCGGAACATGTTATAAACGCACTGGAAAGTCTAGGATTTGGGTCATACATCGCAGAAGTAAAAGACGTTCTGCAGGAGTGTAAAACTGTAGCACTTAAAAGAAGAAAGGCCAGCTCTCGACTAGAGAACCTTGGCATTCCTGAGGAAGAACTTCTCCGCCAACAACAGGAATTATTTGCTAAGGCACGGCAGCAACAGGCTGAACTGGCACAGCAGGAGTGGTTACAGATGCAGCAGGCCGCCCAGCAGGCACAGTTAGCTGCGGCTTCGGCCAGTTCCACTCAGCAGGCCGGATCTTCCCAGGATGAAGATGAAGAGGACGACATGTGAATCCTGGCAGGCTTTGGCTGAAGCACACGGATagatttacaaattat

Function

GO:

id name namespace
GO:0051123 RNA polymerase II preinitiation complex assembly biological_process
GO:0006338 chromatin remodeling biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0017054 negative cofactor 2 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005671 Ada2/Gcn5/Ada3 transcription activator complex cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0001046 core promoter sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-061013-797 Predicted to enable TBP-class protein binding activity and core promoter sequence-specific DNA binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly; chromatin remodeling; and regulation of transcription by RNA polymerase II. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and negative cofactor 2 complex. Orthologous to human DR1 (down-regulator of transcription 1).

Ensembl:

ensembl_id ENSDART00000164159

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064743 lncRNA downstream 634929 23420169 ~ 23421738 (-) True XLOC_032850
TCONS_00065149 lncRNA downstream 841873 23210551 ~ 23214794 (-) True XLOC_032848
TCONS_00064742 lncRNA downstream 842381 23210551 ~ 23214286 (-) False XLOC_032848
TCONS_00064741 lncRNA downstream 939319 23107603 ~ 23117348 (-) True XLOC_032847
TCONS_00064740 lncRNA downstream 1038187 23018053 ~ 23018480 (-) True XLOC_032846
TCONS_00064744 lncRNA upstream 151269 24217928 ~ 24219177 (-) True XLOC_032859
TCONS_00063875 lncRNA upstream 314952 24381611 ~ 24384585 (-) True XLOC_032863
TCONS_00065150 lncRNA upstream 783434 24850093 ~ 24869146 (-) True XLOC_032866
TCONS_00063881 lncRNA upstream 1095317 25161976 ~ 25165665 (-) True XLOC_032868
TCONS_00065151 lncRNA upstream 1201292 25267951 ~ 25268308 (-) True XLOC_032872
TCONS_00063860 mRNA downstream 3263 23955755 ~ 24053404 (-) False XLOC_032853
TCONS_00063861 mRNA downstream 97559 23955827 ~ 23959108 (-) True XLOC_032853
TCONS_00063857 mRNA downstream 125225 23891230 ~ 23931442 (-) False XLOC_032852
TCONS_00063858 mRNA downstream 126587 23909011 ~ 23930080 (-) True XLOC_032852
TCONS_00063856 mRNA downstream 437239 23616893 ~ 23619428 (-) True XLOC_032851
TCONS_00063864 mRNA upstream 10295 24076954 ~ 24087279 (-) True XLOC_032855
TCONS_00063865 mRNA upstream 24291 24090950 ~ 24103666 (-) True XLOC_032856
TCONS_00063866 mRNA upstream 74098 24140757 ~ 24143923 (-) True XLOC_032857
TCONS_00063867 mRNA upstream 86157 24152816 ~ 24203980 (-) True XLOC_032858
TCONS_00063868 mRNA upstream 229380 24296039 ~ 24301324 (-) True XLOC_032860
TCONS_00063859 other downstream 3051 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063855 other downstream 661768 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063850 other downstream 1515591 22540982 ~ 22541076 (-) True XLOC_032844
TCONS_00063825 other downstream 3409334 20647227 ~ 20647333 (-) True XLOC_032820
TCONS_00063824 other downstream 3592168 20464402 ~ 20464499 (-) True XLOC_032814
TCONS_00063876 other upstream 719168 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063877 other upstream 775511 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063885 other upstream 1121364 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063901 other upstream 2975088 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063903 other upstream 2984683 27051342 ~ 27055863 (-) True XLOC_032882

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00004923 True 2466 mRNA 0.43 3 CM030140.1 9653584 ~ 9658003 (+)