RNA id: TCONS_00063901


Basic Information

Item Value
RNA id TCONS_00063901
length 509
RNA type processed_transcript
GC content 0.52
exon number 5
gene id XLOC_032882
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 27041594 ~ 27057702 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGTCTAGCTCTGATGACTCTGACATGGATGGAGAAGGGGATGACCGGGACCAGGGGCCCATGTGGACTTTCCCCACTGTTCGGCCCTCTACCATCAACAAGCTAAACAGAGGCCTCAGCCATTTAGACAACAAGACATCAGATGTTATGAAAAGGCAACCAAAGTCATCATCTCTGACATCGTTCATCACACCAATCTTCAAAGAGTTGAAGGAGAAGCGGCGTGTCGGTGGGAATGGTGTTTGTGCTGTGGAGGAGCTGGAAAACGCCTTCAGCCTAGCAGAAGAGTCCAGTCCCGGAATCTCTGACCGGCTGCTCAATCACGTCATGGAGAGAGTCTGCAGGTTTACGCTCAACGGAAACAGCTTACCTTTAAAACGCTGAGGTTTCTCTGACCAGCCTGATGGACAGACTCTCCTGATGCCCTCGTGAGCTGGTCCTCAGCGCCCACCAGCTGAAGACCAACCAGTCTGTCCATCACCGCTTGTATGATGAGATGAGTTTACAA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0003401 axis elongation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-92 Predicted to enable ATP binding activity and protein kinase activity. Acts upstream of or within axis elongation and heart development. Is expressed in cranial ganglion and pharyngeal arch. Orthologous to human STK25 (serine/threonine kinase 25).

Ensembl:

ensembl_id ENSDART00000148683

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065158 lncRNA downstream 3376 27035652 ~ 27038371 (-) True XLOC_032881
TCONS_00063898 lncRNA downstream 162745 26878076 ~ 26879002 (-) False XLOC_032880
TCONS_00065157 lncRNA downstream 215823 26824950 ~ 26825924 (-) True XLOC_032879
TCONS_00065154 lncRNA downstream 366804 26561981 ~ 26674943 (-) False XLOC_032878
TCONS_00065153 lncRNA downstream 366804 26561981 ~ 26674943 (-) False XLOC_032878
TCONS_00063906 lncRNA upstream 63909 27112891 ~ 27115633 (-) False XLOC_032884
TCONS_00063907 lncRNA upstream 67908 27116890 ~ 27123251 (-) True XLOC_032884
TCONS_00065160 lncRNA upstream 441755 27490737 ~ 27491611 (-) False XLOC_032886
TCONS_00065161 lncRNA upstream 441755 27490737 ~ 27491747 (-) True XLOC_032886
TCONS_00063909 lncRNA upstream 571693 27620675 ~ 27623283 (-) False XLOC_032887
TCONS_00063897 mRNA downstream 145997 26874839 ~ 26895750 (-) False XLOC_032880
TCONS_00063899 mRNA downstream 146433 26888743 ~ 26895314 (-) True XLOC_032880
TCONS_00063896 mRNA downstream 481826 26557979 ~ 26559921 (-) True XLOC_032877
TCONS_00063894 mRNA downstream 815933 26063965 ~ 26225814 (-) False XLOC_032875
TCONS_00063893 mRNA downstream 961361 26063962 ~ 26080386 (-) False XLOC_032875
TCONS_00063904 mRNA upstream 55980 27104962 ~ 27108844 (-) True XLOC_032883
TCONS_00063905 mRNA upstream 63902 27112884 ~ 27123327 (-) False XLOC_032884
TCONS_00063908 mRNA upstream 77638 27126620 ~ 27139396 (-) True XLOC_032885
TCONS_00063911 mRNA upstream 647341 27696323 ~ 27727397 (-) True XLOC_032888
TCONS_00063912 mRNA upstream 835390 27884372 ~ 27891961 (-) True XLOC_032889
TCONS_00063885 other downstream 1852964 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 2199461 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 2255804 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063859 other downstream 2988131 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063855 other downstream 3646848 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063903 other upstream 2360 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063923 other upstream 1962929 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other upstream 1996015 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063931 other upstream 2012668 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 2209256 29258238 ~ 29274408 (-) True XLOC_032904

Expression Profile

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