RNA id: TCONS_00063902


Basic Information

Item Value
RNA id TCONS_00063902
length 665
lncRNA type retained_intron
GC content 0.50
exon number 5
gene id XLOC_032882
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 27041594 ~ 27057702 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCAGAGAGGAAGATTCACAGAGACATCAAAGCGGCCAATGTGTTACTCTCTGAGCATGGAGAAGTCAAGCTGGCAGACTTTGGAGTGGCCGGTCAGTTAACAGACACGCAGATcaagagaaacacttttgtagGGACTCCATTCTGGATGGCACCAGAGGTCATCAAACAGTCCGCTTATGACTTCAAGGCTGACATCTGGTCATTGGGCATCACTGCCATCGAGCTGGCTAAGGGAGAACCACCAAATGCTGAACTTCACCCCATGAGGGTCCTGTTCCTCATCCCCAAAAATAACCCCCCCACGCTGGAGGGCTCCTACAGCAAAGCCTTTAAGGACTTTGTTGAAGCTTGTCTCAATAAAGAGCCACGATTTAGACCGACAGCCAAAGAGCTGCTGAAACATAAGTTCATCACCCGCTACACCAAGAAGACGTCTTACCTGTCGGAGCTGATAGATCGATACCGCCGCTGGAAGTCAGAGGGCCATGGGGAGGAGTCTAGCTCTGATGACTCTGACATGGATGGAGAAGGGGATGACCGGGACCAGGGGCCCATGTGGACTTTCCCCACTGTTCGGCCCTCTACCATCAACAAGCTAAACAGAGGCCTCAGCCATTTAGACAACAAGGTAAAAATATGTTCAGATGTAGATTaatattac

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0003401 axis elongation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-92 Predicted to enable ATP binding activity and protein kinase activity. Acts upstream of or within axis elongation and heart development. Is expressed in cranial ganglion and pharyngeal arch. Orthologous to human STK25 (serine/threonine kinase 25).

Ensembl:

ensembl_id ENSDART00000149148

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065158 lncRNA downstream 10352 27035652 ~ 27038371 (-) True XLOC_032881
TCONS_00063898 lncRNA downstream 169721 26878076 ~ 26879002 (-) False XLOC_032880
TCONS_00065157 lncRNA downstream 222799 26824950 ~ 26825924 (-) True XLOC_032879
TCONS_00065156 lncRNA downstream 373780 26661016 ~ 26674943 (-) True XLOC_032878
TCONS_00065155 lncRNA downstream 386055 26661016 ~ 26662668 (-) False XLOC_032878
TCONS_00063906 lncRNA upstream 59386 27112891 ~ 27115633 (-) False XLOC_032884
TCONS_00063907 lncRNA upstream 63385 27116890 ~ 27123251 (-) True XLOC_032884
TCONS_00065160 lncRNA upstream 437232 27490737 ~ 27491611 (-) False XLOC_032886
TCONS_00065161 lncRNA upstream 437232 27490737 ~ 27491747 (-) True XLOC_032886
TCONS_00063909 lncRNA upstream 567170 27620675 ~ 27623283 (-) False XLOC_032887
TCONS_00063897 mRNA downstream 152973 26874839 ~ 26895750 (-) False XLOC_032880
TCONS_00063899 mRNA downstream 153409 26888743 ~ 26895314 (-) True XLOC_032880
TCONS_00063896 mRNA downstream 488802 26557979 ~ 26559921 (-) True XLOC_032877
TCONS_00063894 mRNA downstream 822909 26063965 ~ 26225814 (-) False XLOC_032875
TCONS_00063893 mRNA downstream 968337 26063962 ~ 26080386 (-) False XLOC_032875
TCONS_00063904 mRNA upstream 51457 27104962 ~ 27108844 (-) True XLOC_032883
TCONS_00063905 mRNA upstream 59379 27112884 ~ 27123327 (-) False XLOC_032884
TCONS_00063908 mRNA upstream 73115 27126620 ~ 27139396 (-) True XLOC_032885
TCONS_00063911 mRNA upstream 642818 27696323 ~ 27727397 (-) True XLOC_032888
TCONS_00063912 mRNA upstream 830867 27884372 ~ 27891961 (-) True XLOC_032889
TCONS_00063885 other downstream 1859940 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 2206437 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 2262780 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063859 other downstream 2995107 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063855 other downstream 3653824 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063923 other upstream 1958406 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other upstream 1991492 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063931 other upstream 2008145 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 2204733 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 3149416 30202921 ~ 30203037 (-) True XLOC_032918

Expression Profile

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