RNA id: TCONS_00065161


Basic Information

Item Value
RNA id TCONS_00065161
length 210
lncRNA type antisense_over
GC content 0.58
exon number 2
gene id XLOC_032886
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 27490737 ~ 27491747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcgactcgagccagcaaccttcttgctgtgagGTGTAATCTGTGACGCTGCTGTTGAGAACGGCCGTGCGAGATCCACTACCATCAGCTGGCACCAGAGACACTCGAACCTGACTGATCGCAGCATGACGTCCAACATGCACCAACCACCGCAGCCAAACCTGAGAGGACGACACGTTCACTACCTCCAGCTGATCCACCTGACGAGGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00063907 lncRNA downstream 367486 27116890 ~ 27123251 (-) True XLOC_032884
TCONS_00063906 lncRNA downstream 375104 27112891 ~ 27115633 (-) False XLOC_032884
TCONS_00065159 lncRNA downstream 434874 27041747 ~ 27055863 (-) False XLOC_032882
TCONS_00063902 lncRNA downstream 437232 27048723 ~ 27053505 (-) False XLOC_032882
TCONS_00065158 lncRNA downstream 452366 27035652 ~ 27038371 (-) True XLOC_032881
TCONS_00063909 lncRNA upstream 128928 27620675 ~ 27623283 (-) False XLOC_032887
TCONS_00063910 lncRNA upstream 128928 27620675 ~ 27623299 (-) False XLOC_032887
TCONS_00065162 lncRNA upstream 128928 27620675 ~ 27623521 (-) True XLOC_032887
TCONS_00063913 lncRNA upstream 446742 27938489 ~ 27954601 (-) True XLOC_032890
TCONS_00065163 lncRNA upstream 632634 28124381 ~ 28130130 (-) True XLOC_032892
TCONS_00063908 mRNA downstream 351341 27126620 ~ 27139396 (-) True XLOC_032885
TCONS_00063905 mRNA downstream 367410 27112884 ~ 27123327 (-) False XLOC_032884
TCONS_00063904 mRNA downstream 381893 27104962 ~ 27108844 (-) True XLOC_032883
TCONS_00063900 mRNA downstream 433035 27041594 ~ 27057702 (-) False XLOC_032882
TCONS_00063899 mRNA downstream 595423 26888743 ~ 26895314 (-) True XLOC_032880
TCONS_00063911 mRNA upstream 204576 27696323 ~ 27727397 (-) True XLOC_032888
TCONS_00063912 mRNA upstream 392625 27884372 ~ 27891961 (-) True XLOC_032889
TCONS_00063914 mRNA upstream 623636 28115383 ~ 28117995 (-) True XLOC_032891
TCONS_00063915 mRNA upstream 724740 28216487 ~ 28222592 (-) True XLOC_032893
TCONS_00063916 mRNA upstream 847915 28339662 ~ 28345002 (-) True XLOC_032894
TCONS_00063903 other downstream 434874 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063901 other downstream 441755 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063885 other downstream 2301954 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 2648451 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 2704794 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063923 other upstream 1520164 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other upstream 1553250 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063931 other upstream 1569903 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 1766491 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 2711174 30202921 ~ 30203037 (-) True XLOC_032918

Expression Profile

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