RNA id: TCONS_00063913


Basic Information

Item Value
RNA id TCONS_00063913
length 1715
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_032890
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 27938489 ~ 27954601 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAAGTTGAAGAAGGAAAGCCGACTCACCTTTTACCATTAAAGAGTGTAATTACCATTTGACTGGGCAGGAGGAAATGGGGCTCCATACCCAGAGGCTCTGTTCATCTGGCCCAGCCAAAACCACATAAAGCCAGAAGGGGAACAGGAGAAGGAGCGTAATGGTGGTGCATGGAGGGACTCCAGCGGGCCGTCGTTTTACTGTTACCTGAGAGCGCAGCTCACTCCTCCTGCCATTCAGGACAATGAGCTGCCAAACACACAAAGACGGCGGGAGGAAATGGCtgggaaaaaaaagaacagaagaGGAGAGAGAAACATGAGTTGGAATGAGAAAGTCATGTTCAGTCCAGCTCGCTGAAAGACTTTCATCTAGACTACAACATAAACCAAGAAGACAACACCAAgatttattgtgctcaaattgcGAAAGAGTTCAGGGAGCATGAGACATGGATTGGTCAACACAGAGTCCAGATCTTAACCCTATTGAGAatctttgggatgtgctggagaGGACTTTGCACAACAGTCAGACTCTTCCATCATCAATGCAATATCTTTGGACCTTtggatttgtttttatatacaaatatacattttaaaatatcttgcATCAACAGAATAAACTGTTACAATGTCCCAAactaaaatgtataacaaaactgTAGGACAGAATTCACAAACTCAATAAATTTAGTTGCAGGTCGTGTGACAAGCCACAATCACTCATACACCATGCAAACAAGTTGGCATGTGGAGAAAATGGTCAGTTGTTTACACATCGCACTTTGAATGCCTTGTGGAGCCAAGTCTACACCACAGGCCCAAATAAGAACAAATCTAGATCACCCATTTTCACACACTCTACAGCAAATCCACAAATTTACCCCACCACATCTTTAGAGAGGACTTCAAAACCAAAACATTTCTCGAGTTTGCGTCAATCCACCAAGTAAGAATGTAAACAGGCATTCCCTGCTGCAAAAGCCCCTATCTTCAGTACAGCAAGAGGAATCAGACCCCTGTAAGTACAACAGGCCTCGGTTATGACCCTCTAAAGTTGGCACACCCTCTCCTTTGCACATTTCACATTCCTCAAACACAATCACACTTCCCCTCCACCTCTAGAGTTCTAGGAAAACAGCAAACGAGAATCCAGCACAATCAACAGCTCAAAGGAATGTCAGCTTATGTTGGCAGATCCAGATAAGAAGCACTAAGCTGCTACAGCATAATAATATAAACCATTAGGAGGGAAAATGGGTCTATTTTGTTGCTTTTTAACAGGAAAAAACTGTGAAGAAAAACAGTGAAATGCATTCATATGTAGAAGATTAAAATCACTTCAAGGCCATTTAGCTATTGTGGTAGAGGAATTTAGGAATGATGAATATTCCACATCCACGcaacacaccaacacacaaatactgtatttttcaGCTGCCAAAGAGAATTACCATTTCTGATCATATTTCTCAAATCTTTCATGACCCACACAATATTCGGATGAActctaccagtcaaaagtttggcgTCAGTacgattttttaaatattttacaataagattatcctgctcaccaagacttttttttaccaaaaatgcaataaaaatagcttataatttaattataatgtaataatttattccagtgattttaacagtgatttttttatCTTCATTACTGCAgccttcagagtcacatgatccttc

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065162 lncRNA downstream 314968 27620675 ~ 27623521 (-) True XLOC_032887
TCONS_00063910 lncRNA downstream 315190 27620675 ~ 27623299 (-) False XLOC_032887
TCONS_00063909 lncRNA downstream 315206 27620675 ~ 27623283 (-) False XLOC_032887
TCONS_00065161 lncRNA downstream 446742 27490737 ~ 27491747 (-) True XLOC_032886
TCONS_00065160 lncRNA downstream 446878 27490737 ~ 27491611 (-) False XLOC_032886
TCONS_00065163 lncRNA upstream 169780 28124381 ~ 28130130 (-) True XLOC_032892
TCONS_00063920 lncRNA upstream 1015969 28970570 ~ 28972021 (-) False XLOC_032897
TCONS_00063921 lncRNA upstream 1020557 28975158 ~ 28980829 (-) True XLOC_032897
TCONS_00065164 lncRNA upstream 1029416 28984017 ~ 28986397 (-) True XLOC_032898
TCONS_00063929 lncRNA upstream 1090038 29044639 ~ 29045293 (-) False XLOC_032900
TCONS_00063912 mRNA downstream 46528 27884372 ~ 27891961 (-) True XLOC_032889
TCONS_00063911 mRNA downstream 211092 27696323 ~ 27727397 (-) True XLOC_032888
TCONS_00063908 mRNA downstream 799093 27126620 ~ 27139396 (-) True XLOC_032885
TCONS_00063905 mRNA downstream 815162 27112884 ~ 27123327 (-) False XLOC_032884
TCONS_00063904 mRNA downstream 829645 27104962 ~ 27108844 (-) True XLOC_032883
TCONS_00063914 mRNA upstream 160782 28115383 ~ 28117995 (-) True XLOC_032891
TCONS_00063915 mRNA upstream 261886 28216487 ~ 28222592 (-) True XLOC_032893
TCONS_00063916 mRNA upstream 385061 28339662 ~ 28345002 (-) True XLOC_032894
TCONS_00063917 mRNA upstream 959632 28914233 ~ 28943056 (-) True XLOC_032895
TCONS_00063918 mRNA upstream 991440 28946041 ~ 28961660 (-) True XLOC_032896
TCONS_00063903 other downstream 882626 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063901 other downstream 889507 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063885 other downstream 2749706 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 3096203 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 3152546 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063923 other upstream 1057310 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other upstream 1090396 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063931 other upstream 1107049 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 1303637 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 2248320 30202921 ~ 30203037 (-) True XLOC_032918

Expression Profile

//