RNA id: TCONS_00063919


Basic Information

Item Value
RNA id TCONS_00063919
length 1868
RNA type mRNA
GC content 0.42
exon number 18
gene id XLOC_032897
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 28970513 ~ 28980829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATCTTCCGCAGAAAAGCCTAGTTTATAATCCTGACCTTGAAGTGTTGTTTGTATGGATTATTTTTGAAAAGACCAGATCTGACAATGGCAGTGAATCAACTAGAAGATGTAATTCAAAAATGGAGAACAATTGAAGAGTTTAAACCAGAAGACCATGAACTCTTTCTAAATGCTGGCCATACTTGCATTGCCCAAGGTGATGGCACTCTACTACTGAACTTCATAAAAGACGAGGCAAATAAGCACATAGTGAGGTCTATGGGCGGTGGTCTAGTGCCTGCACTGGTGAGTGAAGTGCTGAGAAATGGCCGCAGTGCTGTTCACTGTCAGGCTATCCTCAGTGAACTAGTACAGaTCTGCAGAGTGAAAGAAGTACTCAATACTTTACTTCAACAAGTGGATGATGCTGATCCGAATGCAATTGCGGACTCTATCATTGTTCTCATGCCTCCTATTCAGTCAGTTCTATTGAGAATGAGCGAGTTGAAGGCCCCTGGATTGTCTATGGCCCTTGATTCACTTCAGAAACAGATTTCAAAGTTGCCTGTACCATACTCAAACAAACAGGAACAGGAAGATGTGTATGGGCTCTGCCGATGCTGCACTGCAGTACTGACCTTTATACAACCCTTCGTGCAGGAAGTCAAGAATCAAGACACAAACTCAGAGGCCACTAGTTTAAGAGCTGCTCTTCTAAAGTTTTGCATGAACAGTCTAAGGGAACCCCTCCTCCAAGCTCAACTGGACAGAGAGGGCAACAAAACAGAAATTTTGCCACTGTGGAATTTTGCAGCAGAAATAATGGCAATCCTAGTAGTGATCCAAGAATCTCTACCAAAAATCCTGTTCTACCATCCTGTGAGGGGAAAAGAGGACGACATACTAGAGAAACAAGCCTGCCATCCAAATGAATCAAAAGCTTGCATTGCTTACTTGCTGTTTGTCCAACTTATTGCCATAGATGTTTTCCCTGCAGTTTTTAGcCCTGTTTTTGTACTCCAGTGTAATATGGAATACATCAATCTTCTGTTGAGTAGAAAAGATGAATCATGGATTTTGAAAGGACTGGACTTACATGTTAAAAGTTTGGAAAGAATAACAGCCTGCAGTCTCCCAGTGGAGCTCTTAGACCTGAAACCATTCCATGAGGTTCCGCAGAGCTTAATTAAAATTATGATTGAATGTCCTATCCAGCATTTGAGAGGAAGAAGCCTTGTGGTGTTCCAGCTCTTTATAGAGAAGCTTAATGGTGAAGCAAAGCACAAATTTTTCAGGCGCATAATAAAAACTAGCCATCATGCAGGTGTAGAAAGTACCATcctcaaaaacataaaaaatcaaGTGGAACAAACCAGAAAGTCAGTCTACCAAGATGGCTGGTTTGAGGGGACTCGGCTTATCTCACTGCTCAGAGACACTATCTGTCTCCCACAGGGCCACGAAACTGACTTGCTACATGGAATGGACAGggtCATGGAGTCTCTAAATCTTCTGCGGTATTTACTGATACAGAAAAGAGGAATTTCTACTGGAGAGTGGACAGACCTGTGCCATATTGCTGAGACGTACACAAAATTACTACGTGTTTGTCTAAGCATGTCAAAATCATACTATGGAACTGAGTTAAAAAGACTTCGAGAAAACAAAAAGATTAAGGCTAAAGAATTCAAAGAGGCATCTGGAAAGAGATCAGTTCAGAGCTTGATTGTGAAAACGGAGACGCTTGGTAGCATGCCACCTGAGGCACAGGATAAGGTCTTGCAGTGCGCCCTGGTCACATGTGACTTAATGGAAAGTCTTGTAGTCCGGATTGAAGAGATCATTGAGGAGAGTCAAAAATGAAGTACTGCGCACATTTACTGCAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0055105 ubiquitin-protein transferase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-14 Predicted to enable ubiquitin-protein transferase inhibitor activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in arteriovenous malformation and glomus tumor. Orthologous to human GLMN (glomulin, FKBP associated protein).

Ensembl:

ensembl_id ENSDART00000014661

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065163 lncRNA downstream 840383 28124381 ~ 28130130 (-) True XLOC_032892
TCONS_00063913 lncRNA downstream 1015912 27938489 ~ 27954601 (-) True XLOC_032890
TCONS_00065162 lncRNA downstream 1346992 27620675 ~ 27623521 (-) True XLOC_032887
TCONS_00063910 lncRNA downstream 1347214 27620675 ~ 27623299 (-) False XLOC_032887
TCONS_00063909 lncRNA downstream 1347230 27620675 ~ 27623283 (-) False XLOC_032887
TCONS_00065164 lncRNA upstream 3261 28984017 ~ 28986397 (-) True XLOC_032898
TCONS_00063929 lncRNA upstream 63883 29044639 ~ 29045293 (-) False XLOC_032900
TCONS_00063935 lncRNA upstream 175158 29155914 ~ 29159888 (-) True XLOC_032902
TCONS_00063941 lncRNA upstream 354402 29335158 ~ 29335942 (-) True XLOC_032906
TCONS_00065165 lncRNA upstream 429470 29410226 ~ 29411285 (-) True XLOC_032908
TCONS_00063918 mRNA downstream 8853 28946041 ~ 28961660 (-) True XLOC_032896
TCONS_00063917 mRNA downstream 27457 28914233 ~ 28943056 (-) True XLOC_032895
TCONS_00063916 mRNA downstream 625511 28339662 ~ 28345002 (-) True XLOC_032894
TCONS_00063915 mRNA downstream 747921 28216487 ~ 28222592 (-) True XLOC_032893
TCONS_00063914 mRNA downstream 852518 28115383 ~ 28117995 (-) True XLOC_032891
TCONS_00063922 mRNA upstream 23306 29004062 ~ 29007493 (-) True XLOC_032899
TCONS_00063924 mRNA upstream 31155 29011911 ~ 29086473 (-) False XLOC_032900
TCONS_00063925 mRNA upstream 36768 29017524 ~ 29049022 (-) False XLOC_032900
TCONS_00063927 mRNA upstream 39009 29019765 ~ 29051788 (-) False XLOC_032900
TCONS_00063926 mRNA upstream 39009 29019765 ~ 29051788 (-) False XLOC_032900
TCONS_00063903 other downstream 1914650 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063901 other downstream 1921531 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063885 other downstream 3781730 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 4128227 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 4184570 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063923 other upstream 31155 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other upstream 64241 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063931 other upstream 80894 29061650 ~ 29084651 (-) True XLOC_032900
TCONS_00063938 other upstream 277482 29258238 ~ 29274408 (-) True XLOC_032904
TCONS_00063952 other upstream 1222165 30202921 ~ 30203037 (-) True XLOC_032918

Expression Profile

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